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Biological molecules at surfaces

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lightbulbAbout this topic
Biological molecules at surfaces refer to the study of the interactions and behaviors of biomolecules, such as proteins, lipids, and nucleic acids, when they are in contact with various surfaces. This field examines how these interactions influence biological functions, material properties, and the development of biomaterials and biosensors.
lightbulbAbout this topic
Biological molecules at surfaces refer to the study of the interactions and behaviors of biomolecules, such as proteins, lipids, and nucleic acids, when they are in contact with various surfaces. This field examines how these interactions influence biological functions, material properties, and the development of biomaterials and biosensors.

Key research themes

1. How do surface chemistry and topography influence the adsorption, orientation, and activity of biological molecules on material surfaces?

This research area investigates the fundamental interactions between biomolecules (proteins, peptides, DNA, extracellular polymeric substances) and various solid surfaces with different chemical functionalities and physical architectures. Understanding how surface properties such as hydrophobicity, charge, functional groups, and nanoscale topography control biomolecular adsorption, orientation, conformational stability, and activity is essential for optimizing biosensors, implants, antimicrobial surfaces, and microarrays that rely on immobilized biological molecules.

Key finding: This comprehensive analysis details how protein adsorption specificity and conformational changes depend on surface chemistry and morphology, highlighting immobilization strategies such as covalent binding, self-assembled... Read more
Key finding: The paper categorizes antibacterial surfaces into antibiofouling and bactericidal types, emphasizing the roles of chemical modifications and physical surface nanotopographies inspired by natural surfaces. It demonstrates that... Read more
Key finding: Experimental evidence coupled with infrared spectroscopy and AFM showed that local electric fields at nanostructured silicon surfaces induce electrostatic interactions that reorient adsorbed bovine serum albumin, while... Read more
Key finding: Using self-assembled monolayers (SAMs) with varied terminal groups, the study reveals that the adsorption of microbial tightly bound extracellular polymeric substances (TB-EPS) strongly depends on surface chemistry, pH, and... Read more
Key finding: The research quantified bacterial adhesion kinetics on SAMs with different functional groups, demonstrating that hydrophobic and neutral surfaces promoted rapid, compact microbial attachment and EPS adsorption, while... Read more

2. What are the theoretical and computational approaches for predicting and clarifying the structure and dynamics of biomolecules adsorbed on surfaces?

A critical challenge in biomaterials and surface science is predicting how biomolecules arrange and stabilize on various substrates at the molecular level. Computational modeling and molecular dynamics simulations complement experimental studies, enabling atomic-level insight into biomolecular conformations, adsorption energetics, and interfacial water organization. This theme addresses efforts to develop accurate force fields, global energy landscape mapping, and simulation protocols to predict stable molecular conformers and assemblies on surfaces.

Key finding: This review synthesizes theoretical and computational methods, including global optimization and energy landscape exploration, emphasizing that while experimental atomic-resolution data on biomolecules adsorbed on surfaces... Read more
Key finding: The study reviews force fields suitable for capturing peptide and protein adsorption on diverse surfaces, emphasizing the importance of accurately modeling hydrophobic and electrostatic interactions. It highlights that... Read more
Key finding: Molecular dynamics simulations reveal that not only interface and rim residues but also non-interacting surface regions modulate protein-protein binding affinity via distinct solvent dynamics. The study demonstrates that... Read more
Key finding: Molecular dynamics simulations show that the relative strength of surface-chain and chain-chain interactions directs the ordering and orientation of alkyl chain molecules in monolayers. When surface affinity is low, chains... Read more

3. How can surface functionalization and immobilization strategies be engineered to optimize bioactivity and stability of biomolecules on surfaces for biosensing and biomedical applications?

Achieving a biocompatible, bioactive and stable immobilization of biomolecules is essential for the successful development of biosensors, microarrays, antimicrobial coatings, and tissue engineering scaffolds. This theme encompasses the chemical and enzymatic surface modification techniques, site-specific covalent grafting, and bioorthogonal chemistries used to preserve biomolecule activity and orientation. The goal is to integrate biofunctionalized surfaces into devices with predictable performance and cellular interactions.

Key finding: This overview correlates microarray assay sensitivity and specificity with surface functionalization approaches, analyzing polymeric coatings and immobilization chemistries for protein and DNA probes in label-free biosensing.... Read more
Key finding: Introducing a tyrosinase-catalyzed, metal-free polymeric catechol coating functionalized with tetrazine groups enables chemo-orthogonal and catalyst-free covalent grafting of trans-cyclooctene-tagged biomolecules via... Read more
Key finding: The study demonstrates green synthesis of gold and silver nanoparticles capped with various biomolecules (amino acids, polyphenols) forming stable surface coronas that impart free radical scavenging and enzymatic mimic... Read more
Key finding: Through an engineering lens, the paper categorizes antimicrobial surfaces into biocide releasing and contact killing types, analyzing design choices balancing efficacy, environmental impact, and durability. It emphasizes the... Read more
Key finding: This work describes methods to coat silica substrates with fluid lipid bilayers and immobilized proteins or membrane proteins, preserving conformational fluidity critical for function. It introduces supramolecular... Read more

All papers in Biological molecules at surfaces

Effective atomic numbers for photon energy absorption, , and for photon interaction, , have been calculated by a direct method in the photon‐energy region from 1 keV to 20 MeV for biological molecules, such as fatty acids (lauric,... more
Siliconization is defined as a surface treatment process, the objective of which is to prevent undesirable interactions between the treated surface and biological macromolecules. Literature review reveals that siliconization encompasses... more
Various metal sulphides were selected for gamma and neutron shielding prediction by (Phy-X and NGCAL). The gamma parameters calculated by both software programs in the studied energy range were found to be identical, with differences (Δ%... more
Various metal sulphides were selected for gamma and neutron shielding prediction by (Phy-X and NGCAL). The gamma parameters calculated by both software programs in the studied energy range were found to be identical, with differences (Δ%... more
This chapter presents an overview of the room temperature ionic liquids (RTILs), their composition, synthesis and use in electrochemical investigations. The advantageous electrochemical properties of RTILs make them a useful alternative... more
The imperative advancement of gamma-ray shielding materials is pivotal for ensuring radioactive and nuclear safety. In this study, our objective was to ascertain key gamma ray shielding parameters, including the mass attenuation... more
Manipulation techniques of materials at nanoscale level have been pointed in the last decades as a promising tool to develop a new class of modified electrodes applicable in biosensors. Also, the high control of material properties is... more
The two-step electrochemical reduction of tetrachloro-1,2-benzoquinone (chloranil), 2-methyl-1,2-benzoquinone (toluquinone), and 9,10-anthraquinone in two room-temperature ionic liquids is addressed by means of voltammetry on a platinum... more
New solid-contact potentiometric sensors have been developed for hydrogen phosphate recognition on the basis of ionic liquids containing tetrasubstituted derivatives of thiacalix[4]arene in cone and 1,3-alternate conformations with... more
Glass nanopore-based all-solid-state ion-selective electrodes (ISEs) have been developed to probe the distribution of ionic species at micro-or submicrometer-length scales, e.g., mapping of ion flux through micrometer-sized pores. The... more
Over the past decade many works have focused on various aspects of the dynamics of liquids confined at the nanoscale such as e.g. water flow enhancement through carbon nanotubes (CNTs). Transport of room temperature ionic liquids (RTILs)... more
Cyclic voltammetry is used to investigate the transfer of several semihydrophobic and hydrophilic anions (
Cyclic voltammetry was used to investigate the oxidation of 8-oxo-2'-deoxyguanosine (8-oxo-dG) on the glassy carbon (GC), platinum, gold and SnO 2 electrodes over a range of the sweep rate, 8-oxo-dG concentration and the solution pH.... more
Ion transfer voltammetry at a polarized hydrophobic room temperature ionic liquid (RTIL) membrane was used for evaluation of the diffusion coefficients and the standard Gibbs energies of ion transfer of the protonated antimuscarinic... more
Breathomics is widely emerging as a strategy for non-invasive diagnosis of respiratory inflammation. In this study, we have evaluated the metabolic signals associated with Coronavirus (SARS COV-2), mainly the release of nitric oxide in... more
Cyclic voltammetry is used to investigate the transfer of several semihydrophobic and hydrophilic anions (
Ion and electron transfer reactions at the interface between a redox-active ionic liquid (IL), (ferrocenylmethyl)dodecyldimethylammonium tetrakis[3,5-bis(trifluoromethyl)phenyl]borate (FcMD-DATFPB), and water were investigated by cyclic... more
Cyclic voltammetry was used to investigate the oxidation of 8-oxo-2'-deoxyguanosine (8-oxo-dG) on the glassy carbon (GC), platinum, gold and SnO 2 electrodes over a range of the sweep rate, 8-oxo-dG concentration and the solution pH.... more
An amperometric solid-state sensor for the detection of nitrogen oxide in air has been constructed using a gold minigrid indicator electrode, Pt/air reference and platinum counter electrodes in contact with a solid polymer electrolyte... more
Ion transfer voltammetry at a polarized hydrophobic room temperature ionic liquid (RTIL) membrane was used for evaluation of the diffusion coefficients and the standard Gibbs energies of ion transfer of the protonated antimuscarinic... more
Speciation of copper in the abstraction of nano copper with a room temperature ionic liquid (RTIL) (1-butyl-3-methylimidazolium hexafluorophosphate [C 4 mim][PF 6 ]) has been studied by X-ray absorption near edge structural (XANES) and... more
The potential utility of room temperature ionic liquids as electrolytes in current electrochemical applications has been explored. Hence, the electrochemical behavior of [Ni(tmc)]Br2 complex at a glassy carbon electrode in the absence or... more
The identification and transportation of trace explosive residues following the detonation of an explosive device or during an explosive related criminal investigation is a crucial yet often time consuming process. The ability to detect... more
An amperometric ascorbic acid selective sensor utilizing the transfer reaction of proton liberated from the dissociation of ascorbic acid in aqueous solution across an elliptic micro-hole water/ organic gel interface is demonstrated. This... more
We present a new electrochemical system that combines paper-based sensing and ion-transfer voltammetry, bringing the latter a step closer toward point-of-care applications. Studies at the interface between two immiscible electrolyte... more
In this study, total atomic cross-section (σta), total moleculer cross-section (σtm) total electronic cross-section (σte), effective atomic number (Zeff), effective electron density (Neff) and Kerma (K) were determined both experimentally... more
Application of tetraalkylammonium cation clathrate hydrates as electrolytes in interfacial electrochemistry has been presented. All experiments were performed in a wide temperature range, including liquid and solid electrolyte. It has... more
A comprehensive and consistent set of formulas is given for calculating the effective atomic number and electron density for all types of materials and for all photon energies greater than 1 keV. The formulas are derived from first... more
by C. Jun
An electrochemical system composed of two polarizable interfaces (the metallic electrode j water and water j ionic liquid interfaces), namely two-polarized-interface (TPI) technique, has been proposed to explore the ion transfer processes... more
Nanotechnology applications in technique, analytical chemistry, environmental chemistry and life science allows to change ours conception about possibilities of chemical technology. One of significant applications of nanotechnology is... more
The applicability of ion exchange membranes is mainly defined by their permselectivity towards specific ions. For instance, the needed selectivity can be sought by modifying some of the components required for the preparation of such... more
Many relevant questions in biology and medicine require both topography and chemical information with high spatial resolution. Several biological events that occur at the nanometer scale level need to be investigated in physiological... more
Graphite rods coated with poly(dimethyldiallylammonium chloride), poly(DMDAAC), and subjected to immobilization by 7-irradiation have been shown to respond linearly to dissolved oxygen concentration. The oxygen is detected... more
A fuel cell based amperometric H 2 sensor with pulsed electrodeposited electrodes has been developed and tested for its performance. Nafion, a commercial proton exchange membrane was used as electrolyte in the sensor. Platinum (Pt)... more
Environmental monitoring has been one of the key to provide better safety measure in various sectors of life. The most famously featured technology in this area is the gas detecting system. It serves not only in an early-warning... more
88.0 keV photon energies. The samples were irradiated with 109 Cd and 241 Am radioactive point sources using transmission arrangement. The X-and c-rays were counted by a Si (Li) detector with resolution of 160 eV at 5.9 keV. Total atomic... more
Cyclic voltammetry was used to investigate the oxidation of 8-oxo-2'-deoxyguanosine (8-oxo-dG) on the glassy carbon (GC), platinum, gold and SnO 2 electrodes over a range of the sweep rate, 8-oxo-dG concentration and the solution pH.... more
Chlorine gas is a greenish-yellow gas that is one of the most utilized gases in numerous industrial fields. It has been categorized as a choking agent that can threaten human, animal, and environmental safety. Currently, development of... more
The construction and performance characteristics of ionselective micro-electrodes for acetylcholine and choline based on their complexes with dipicrylamine are described. The micro-electrodes show near-Nemstian response over ranges of... more
The technological utility of biomolecules (e.g. proteins, enzymes and DNA) can be significantly enhanced by combining them with ionic liquids (ILs)-potentially attractive "green" and "designer" solvents-rather than using in conventional... more
Subnanomolar limits of detection (LODs) are obtained for stripping voltammetry based on ion transfer at the interface between the aqueous sample and the thin polymeric membrane supported with a solid electrode. It has been predicted... more
Determination of the mass attenuation coefficient, l/q, the effective atomic number, Z eff , and the effective electron number, N eff , is very important in the fields of nuclear diagnostics, radiation protection, nuclear medicine and... more
The electrochemical behavior of a platinum electrode in a set of 1-alkyl ether (and 1-alkyl)-3-methylimidazolium room-temperature ionic liquids (RTILs) 1-3 ([C x O y Mim] + [Anion] − or [C x Mim] + [Anion] − , where Mim =... more
Cyclic voltammetry measurements using a platinum electrode were performed to study the effect of water when added to the imidazolium room-temperature ionic liquids (RTILs) 1 [C 7 O 3 MIm][Mes] and 2 [C 3 O 1 MIm][Mes]. The addition of a... more
Speciation and possible reaction paths of nanosize copper pollutants extracted with a RTIL (room-temperature ionic liquid ([C 4 mim][PF 6 ], 1-butyl-3-methylimidazolium hexafluorophosphate)) have been studied in the present work.... more
The effective atomic numbers (Z eff) and effective electron density (N e) for three different steels have been determined via the mass attenuation coefficients (l/q). The mass attenuation coefficients have been calculated at the photon... more
Cyclic voltammetry is used to study the transfer of a series of cations and anions across a room-temperature ionic liquid membrane composed of tridodecylmethylammonium cation and tetrakis[3,5-bis(trifluoromethyl) phenyl]borate anion. It... more
The focus of this article is to describe a simple-to-use, disposable sensor suitable for the rapid determination of pollutants in aqueous media, utilising a novel sonochemical microelectrode fabrication technique. The use of... more
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