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Enzyme reactions

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Enzyme reactions refer to the biochemical processes in which enzymes catalyze the conversion of substrates into products, facilitating chemical reactions by lowering the activation energy required. These reactions are essential for various metabolic pathways and are characterized by specificity, efficiency, and regulation.
lightbulbAbout this topic
Enzyme reactions refer to the biochemical processes in which enzymes catalyze the conversion of substrates into products, facilitating chemical reactions by lowering the activation energy required. These reactions are essential for various metabolic pathways and are characterized by specificity, efficiency, and regulation.

Key research themes

1. How do thermodynamics and enzyme kinetics interrelate to shape enzymatic reaction rates?

This research theme focuses on dissecting the mathematical and physical underpinnings linking thermodynamic driving forces to enzyme kinetic parameters, advancing the understanding of how enzyme catalysis efficiency is modulated by substrate/product concentrations and reaction energetics. It provides frameworks to quantitatively integrate reversible kinetics with thermodynamic constraints to model enzyme action more realistically across physiological conditions.

Key finding: This work decomposes the reversible Michaelis-Menten rate law into three interpretable factors—enzyme catalytic capacity, substrate saturation, and thermodynamic driving force—providing a separable rate law that explicitly... Read more
Key finding: This comprehensive guideline establishes standards for accurate determination and reporting of apparent equilibrium constants (K′) in enzymatic reactions, emphasizing the distinction between chemical and biochemical... Read more
Key finding: This study rigorously analyzes how product inhibition affects enzyme kinetic measurements, showing that conventional initial velocity methods can misinterpret rates in the presence of product inhibition. By employing... Read more
Key finding: This paper derives explicit equations for first-order rate constants associated with enzyme-substrate complex activation (k+2) and deactivation (k-2), as well as product release, revealing underexplored kinetic parameters... Read more

2. What are effective computational and experimental strategies for functional classification and characterization of enzymes?

This theme covers the methodologies for classifying enzymes according to their functional properties using sequence, structure, and feature-based approaches, including the integration of computational tools and experimental data. It addresses the need for automated classification to cope with the growing volume of protein data and the challenges in predicting enzyme functions that are critical for both basic science and industrial enzyme application.

Key finding: The paper reviews and compares three major methods for enzyme functional classification: sequence alignment, structure-based classification, and feature extraction techniques. It emphasizes the challenges in accurately... Read more
Key finding: This review highlights the critical role of microbial enzymes in industrial and medical applications and explores state-of-the-art enzyme discovery and optimization technologies, including metagenomics, protein engineering,... Read more
Key finding: The study documents the application of fungal-derived commercial enzymes, primarily amylases, pectinases, and cellulases, in improving efficiency and product quality in alcoholic and non-alcoholic beverage industries. It... Read more

3. How are enzymatic reactions exploited and optimized in industrial bioprocesses through tailored enzyme applications and engineering?

This theme explores applied enzymology focusing on enzyme catalysis in industrial synthesis, bioremediation, and product formation, with attention to enzyme immobilization, reaction condition optimization, and enzyme stability. It investigates how reaction kinetics and enzyme properties are tuned or engineered for enhanced synthetic efficiency, sustainability, and novel biocatalyst development.

Key finding: This experimental and modeling study assesses the impact of substrate concentration, molar ratios, and enzyme reuse on the kinetics of lipase-catalyzed esterification to synthesize pentyl acetate. The results show that high... Read more
Key finding: The chapter synthesizes the utilization of hydrolases and oxidoreductases enzymes such as amylases, cellulases, pectinases, and proteases in sustainable textile processing, highlighting enzyme-mediated desizing,... Read more
Key finding: This study combines enzymatic alcoholysis catalyzed by immobilized lipases with particle formation via gas saturated solution processes to enhance polyunsaturated fatty acid (PUFA) content and develop stable,... Read more
Key finding: The special issue reviews advances in enzyme-catalyzed synthesis of polymers such as polyesters and polysaccharides using immobilized lipases and phosphorylases under solventless and mild conditions. It describes enzymatic... Read more
Key finding: This paper addresses kinetic analysis of complex reaction networks in multiphase enzymatic esterification systems using lyophilized fungal mycelium. Combining initial rate and integral methods, and incorporating equilibrium... Read more

All papers in Enzyme reactions

of omega-3 polyunsaturated fatty acids and astaxanthin-rich salmon oil using particles from gas saturated solutions (PGSS) process, LWT-Food Science and Technology (2018),
Most of the health benefits of fish oil can be attributed to the presence of omega-3 fatty acids like Docosahexenoic acid (DHA) and Eicosapentaenoic acid (EPA). There are few dietary sources of EPA and DHA other than oily fish. EPA and... more
Wheat germ oil is a unique source of highly concentrated nutrient; its beneficial active ingredients could have a substantial impact on human health considering the amount that is used in cooking. In this study, wheat germ oil was... more
Fucoxanthin is a precious marine carotenoid with multiple bioactivities such as antioxidant, anti-obesity, and anti-cancer effects. Despite its valuable properties, fucoxanthin possesses high sensitivity when exposed to aerial, thermal,... more
The separation of oil by a suitable technique from the Pacific oyster muscle is important for the utilization of the oil as a ω-3 polyunsaturated fatty acids (ω-3 PUFAs) source and production of bio-functional peptides/ oligosaccharides... more
A relatively complex network of reactions has been investigated, using as a network model the isothermal batch esterification of acetic acid with ethanol in n-heptane catalyzed by lyophilized mycelium of Aspergillus oryzae. The kinetic... more
Production of omega-3 fatty acids from lemuru fish by-products was studied by enzymatic hydrolysis using a lipase enzyme in one liter of the batch reactor. The hydrolysis temperature of fish oil was set at 45 to 55 ℃ for 0 to 24 h,... more
Particle design is presently a major development of supercritical fluids applications, mainly in the paint, cosmetic, pharmaceutical, and specialty chemical industries. Supercritical fluids have been successfully used to obtain composites... more
The combined Electron Localization Funtion (ELF)/ Noncovalent Interaction (NCI) topological analysis (Gillet et al. J. Chem. Theory Comput. 2012, 8, 3993) has been extended to enzymatic reaction paths. We applied ELF/NCI to the reactions... more
Substrate and product concentration data obtained by simulating enzyme-substrate reaction rate equations were used to test two proposed kinetic rate constant estimation techniques in this study. In the first technique, the turnover... more
Production of omega-3 fatty acids from lemuru fish by-products was studied by enzymatic hydrolysis using a lipase enzyme in one liter of the batch reactor. The hydrolysis temperature of fish oil was set at 45 to 55 ℃ for 0 to 24 h,... more
Substrate and product concentration data obtained by simulating enzyme-substrate reaction rate equations were used to test two proposed kinetic rate constant estimation techniques in this study. In the first technique, the turnover... more
Particle design is presently a major development of supercritical fluids applications, mainly in the paint, cosmetic, pharmaceutical, and specialty chemical industries. Supercritical fluids have been successfully used to obtain composites... more
Most of the health benefits of fish oil can be attributed to the presence of omega-3 fatty acids like Docosahexenoic acid (DHA) and Eicosapentaenoic acid (EPA). There are few dietary sources of EPA and DHA other than oily fish. EPA and... more
MAGs with caprylic acid (CA) catalyzed by the 1,3 specific lipase DF, from Rhizopus oryzae, immobilized on Accurel MP1000, to produce STAGs with the structure CA-PUFA-CA, and (4) purification of STAGs by the neutralization of free fatty... more
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