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Biodiversity of Soil Microorganisms

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Biodiversity of soil microorganisms refers to the variety and variability of microbial life, including bacteria, fungi, archaea, and viruses, present in soil ecosystems. This diversity plays a crucial role in soil health, nutrient cycling, and ecosystem functioning, influencing plant growth and the overall sustainability of terrestrial environments.
lightbulbAbout this topic
Biodiversity of soil microorganisms refers to the variety and variability of microbial life, including bacteria, fungi, archaea, and viruses, present in soil ecosystems. This diversity plays a crucial role in soil health, nutrient cycling, and ecosystem functioning, influencing plant growth and the overall sustainability of terrestrial environments.

Key research themes

1. How do environmental and biotic factors explain global distribution patterns and functional diversity of soil bacterial and fungal communities?

This theme examines the global biogeography of soil microorganisms, focusing on the different distribution patterns of bacteria and fungi across diverse habitats, and how abiotic factors like pH, precipitation, and soil chemistry, as well as biotic interactions such as bacterial-fungal antagonism, shape the taxonomic diversity and functional gene repertoires of soil microbiomes. Understanding these patterns is essential for elucidating the roles of soil microbes in nutrient cycling and ecosystem functioning at a planetary scale.

by Leho Tedersoo and 
1 more
Key finding: By applying metagenomic and metabarcoding techniques on 189 globally distributed topsoil samples, this study identified that bacterial genetic diversity peaks in temperate habitats while fungal diversity shows contrasting... Read more
Key finding: Analyzing bacterial communities across 110 sites with diverse land uses and spanning large spatial scales, this study demonstrated that bacterial community composition is more responsive to soil environmental variables,... Read more
Key finding: Using datasets from two ecologically contrasting regions—Australia and England—this study provided empirical evidence that plant community attributes (species richness, cover) and functional traits significantly explain... Read more
Key finding: By integrating soil bacteriome data from four Southeast Asian countries with varying soil classes and pH, this study showed that geographic locality and soil characteristics distinctly affect the taxonomic diversity,... Read more
Key finding: Over a longitudinal study across thirty long-term monitoring sites with arable land, grassland, and forest soils, the study found that bacterial and fungal communities are highly site- and land-use-specific. Core microbial... Read more

2. What role do plant diversity and plant functional traits play in shaping soil microbial community composition and diversity?

This theme explores how variations in aboveground plant diversity and specific plant functional groups influence the bulk soil microbial communities, including bacteria, fungi, archaea, and protists. It is grounded in the ecological premise that plant communities modulate the soil environment and resource inputs, thereby affecting microbial community richness and composition. Insights from such research are critical for managing agricultural ecosystems and enhancing soil health through plant biodiversity and functional trait-driven mechanisms.

Key finding: Beyond abiotic predictors, aboveground plant community attributes, including species diversity and functional traits, explained a non-redundant and significant portion of variation in soil bacterial and fungal richness and... Read more
Key finding: This review highlights the role of specific rhizospheric microorganisms such as plant growth-promoting rhizobacteria (PGPR) and cyanobacteria in enhancing crop growth and soil fertility, thus contributing to sustainable... Read more
Key finding: Investigating ten cover crop monocultures, this field experiment distinguished effects of cover crop species identity on both resident (DNA-based) and active (RNA-based) bacterial, fungal, protist, and metazoan communities in... Read more

3. How do soil depth, land-use, and anthropogenic management practices influence soil microbial diversity and community structure?

This research theme captures investigations into how vertical stratification in soil profiles, varying land-use types (arable land, grasslands, forests), and human activities such as agriculture management, fertilization, and land conversion affect the composition, abundance, and functional traits of soil microbial communities. This has important implications for understanding microbial ecology under changing environmental and anthropogenic pressures and for applying microbial insights into soil health and sustainable management.

Key finding: Sampling 20 soil profiles across the U.S., this study documented consistent decreases in bacterial and archaeal diversity and biomass with increasing soil depth. It identified specific taxa, such as members of... Read more
Key finding: This review synthesizes evidence that modern agricultural practices involving extensive tillage, synthetic agrochemical applications, and monoculture negatively impact soil microbial community structure and soil... Read more
Key finding: Comparative analyses from Slovak mountain regions demonstrated that land-use types (arable land, permanent and abandoned grasslands, forest) significantly influence soil microbial community structure and activity as measured... Read more
Key finding: Analyzing soils over five years from 30 long-term sites spanning arable, grassland, and forest land-use types, this study identified temporally stable core bacterial and fungal taxa that dominate microbial communities.... Read more
Key finding: Comparing natural forests, oil palm plantations, and degraded land in Indonesia, the study showed that intensive agricultural land-use and fertilizer application led to decreased soil health and a reduction in beneficial soil... Read more

All papers in Biodiversity of Soil Microorganisms

In organic farming, homemade organic fertilizer such as compost or enriched organic material had become one of crucial factors for nutrient management. Other than the limited source of N for organic fertilizer as the key factor for... more
Impact of anthropisation and revegetation on soil microbial diversity was studied by characterizing bacterial community structure in a sandpit located in Terga (Algeria). Soil samples were collected from several sites: an undisturbed... more
Agricultural extension is an essential strength in agricultural development and social innovation factor. It is a key that can capacitate sugarcane farmers to accelerate the adoption of technology in farm production. Furthermore,... more
Se evaluó la efectividad de la coinoculación micorrizarizobacterias en el crecimiento, rendimiento y colonización del chile jalapeño Capsicum annuum L. El presente estudio se realizó de septiembre de 2013 a mayo de 2014. Se utilizó suelo... more
EnglishMicrobial parameters are considered to be potential indicators of soil quality since soil microorganisms can respond rapidly to agricultural management systems. The effect of long-term fertilizer applications on soil, especially... more
En vista de la escasez creciente de tierras, se vuelve impostergable la necesidad de conocer mejor los procesos de degradación y mejoramiento de suelos. Pese a que en el ámbito científico -técnico, se cuenta con parámetros para evaluar la... more
a p p l i e d s o i l e c o l o g y 4 1 ( 2 0 0 9 ) 2 3 9 -2 4 8 a r t i c l e i n f o Article history:
Earthworms transform organo-mineral associations in soil, especially by incorporating fresh residues inside casts where the microbial abundance and activity are enhanced. The heterogeneous distribution of organic carbon in these... more
The plastic film mulching system has a significant role in increasing crop grain yields by changing the microenvironment of the plant. On the other hand, plastic mulching materials pollute the land and water because they are not degraded... more
In the last years, different biotechnological approaches were developed to reduce the indiscriminate use of chemical fertilizers and pesticides and enhance plant growth and health. The most attractive, safe, and environmentally friendly... more
La región pampeana argentina padece acidificación acelerada de sus suelos por su historia productiva y tecnología aplicada en las últimas décadas, derivando en consecuencias sobre los cultivos de cosecha. Experiencias de encalado en... more
La región pampeana argentina padece acidificación acelerada de sus suelos por su historia productiva y tecnología aplicada en las últimas décadas, derivando en consecuencias sobre los cultivos de cosecha. Experiencias de encalado en... more
After the accident of Fukushima Daiichi Nuclear Power Plant (FDNPP), we screened Japanese soybean mini-core collections to select cultivars with low 137Cs accumulation in seeds. Field tests at Fukushima Prefecture resulted in two groups... more
Organic fertilizers are naturally available mineral sources that contain moderate amount of plant essential nutrients. They are capable of mitigating problems associated with synthetic fertilizers. They reduce the necessity of repeated... more
There is considerable uncertainty about how rates of soil carbon (C) and nitrogen (N) cycling will change as CO2 accumulates in the Earth's atmosphere. We summarized data from 47 published reports on soil C and N cycling under... more
EnglishMicrobial parameters are considered to be potential indicators of soil quality since soil microorganisms can respond rapidly to agricultural management systems. The effect of long-term fertilizer applications on soil, especially... more
Tomato (Lycopersicon esculentum) is a worldwide edible vegetable whose cultivation demands agricultural inputs such as fertilization, resulting in high economic and ecological costs. Alternate agricultural practices like biofertilization,... more
Tropical sandy soils (or upper sandy horizons of tropical soils) have diverse physical and chemical constraints: poor structural stability (making soils sensitive to crusting, and compaction), poor nutrient holding capacity and low cation... more
For more than twenty years, nanotechnologies have arisen a huge interest and are used in numerous fields. Carbon nanotubes (CNTs) are one of the most used nanomaterials thanks to their excellent optical, mechanical, electrical and thermal... more
After the accident of Fukushima Daiichi Nuclear Power Plant (FDNPP), we screened Japanese soybean mini-core collections to select cultivars with low 137Cs accumulation in seeds. Field tests at Fukushima Prefecture resulted in two groups... more
The plastic film mulching system has a significant role in increasing crop grain yields by changing the microenvironment of the plant. On the other hand, plastic mulching materials pollute the land and water because they are not degraded... more
Conocer los procesos que ocurren asociados al manejo de suelos y cultivos resulta fundamental para entender los efectos que la actividad agropecuaria causa sobre el ambiente. Los ensayos de larga duración nos ayudan a comprender los... more
cause these plant tissues are the primary substrates for microbial metabolism in soil. Soil microorganisms are limited by the amount and type of plant-Ozone is a greenhouse gas that is accumulating in the derived substrates entering soil,... more
Soil microorganisms are limited by the amount and type of plant‐derived substrates entering soil, and we reasoned that changes in the production and biochemical constituents of plant litter produced under elevated CO2 and O3 would elicit... more
Chemical interactions in forested ecosystems play a role in driving biodiversity and ecosystem dynamics. Plant phenolics released by leaching can influence surrounding plants and soil organisms such as bacteria, fungi or arthropods.... more
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
Soil fertilization with organic fertilizers condition the soil for efficient proliferation and interactions of phages and its bacterial hosts. • Soil dwelling Phages are suitable and sustainable agents in the biocontrol of plant bacterial... more
The diversity of mycorrhizal fungi in the rhizosphere of the carob tree (Ceratonia siliqua) was studied in five regions of Morocco: Taroudant, Khénifra, Afourar, Nador and Ksiba. Microscopic examination of the carob tree soil, collected... more
El objetivo fue evaluar el efecto de la aplicación de estiércol de ovino (EO) en el rendimiento de papa (Solanum tuberosum), para determinar la dosis adecuada a aplicar en el cultivo de papa variedad “canchan” en Acobamba, Huancavelica.... more
In this study, we provide experimental evidences that in calcareous soils microbial degradation/decomposition of citrate can promote Al-(hydr)oxide precipitation concurrently decreasing copper (Cu) solubility by a coprecipitation process.... more
and-conditions-of-access.pdf This article may be used for research, teaching and private study purposes. Any substantial or systematic reproduction, redistribution , reselling , loan or sub-licensing, systematic supply or distribution in... more
To assess the impacts of Cu and Zn on fungi, we tested the growth of 18 taxonomically different saprotrophic (basidiomycete, ascomycete and zygomycete) fungi and their production of extracellular oxidative enzymes on Cu-(0, 100, 200, 400... more
Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto
Revista Ciencias Técnicas Agropecuarias Universidad Agraria de La Habana paneque@isch.edu.cu ISSN (Versión impresa): 1010-2760 CUBA ... 2007 Francisco Higinio Ruiz Espinoza / Pablo Marrero Labrador / Orestes Cruz La Paz / Sergio Zamora... more
Resumen Se plantaron estacas apicales e internodales de dos variedades en tubetes de 400 cm 3 sobre una mezcla de turba y perlita (1:1), y un testigo con compost. Los PGPR evaluados fueron A. brasilense Az39, P. fluorescens ZME4 y P.... more
Las caracteristicas microbiologicas y quimicas del suelo cambian por la aplicacion de abonos organicos y pueden resultar indicadores sensibles al impacto producido. El objetivo de este estudio fue evaluar los cambios a corto plazo en... more
In Baracoa, municipality of the Guantanamo province the coconut seedling nurseries are being affected by the index low of germination and the little vigor of the seedling. The worm casting and the bacteria of the genus Azotobacter has... more
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