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Soil biogeochemistry

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Soil biogeochemistry is the study of the chemical, physical, and biological processes that govern the cycling of nutrients and elements in soil ecosystems. It examines interactions between soil organisms, organic matter, and inorganic compounds, influencing soil fertility, carbon storage, and environmental health.
lightbulbAbout this topic
Soil biogeochemistry is the study of the chemical, physical, and biological processes that govern the cycling of nutrients and elements in soil ecosystems. It examines interactions between soil organisms, organic matter, and inorganic compounds, influencing soil fertility, carbon storage, and environmental health.

Key research themes

1. How do soil organic carbon dynamics and stabilization mechanisms govern soil biogeochemical functioning and ecosystem services?

This research area investigates the processes controlling soil organic carbon (SOC) turnover, stabilization, and their influence on soil health, biogeochemical cycling, and ecosystem services. Understanding these dynamics is critical for enhancing carbon sequestration, mitigating climate change, maintaining soil fertility, and supporting sustainable land management globally. Studies leverage physical and biochemical fractionation methods, microbial metabolism analyses, and carbon pool partitioning to discern SOC behavior under different land uses and environmental conditions.

Key finding: Identified soil biogeochemical processes and biodiversity as fundamental drivers underpinning provisioning, regulating, supporting, and cultural ecosystem services. Highlighted carbon cycling as a key function, demonstrating... Read more
Key finding: Showed that soil organic carbon is a highly dynamic and large terrestrial carbon pool with turnover equal to plant inputs annually. Demonstrated the importance of SOC quantity and quality in soil functions such as nutrient... Read more
Key finding: Introduced an integrated framework illustrating the interplay between microbial carbon use efficiency, substrate chemistry, and clay mineral surfaces in stabilizing soil organic matter as mineral-associated organic matter... Read more
Key finding: Quantified how afforestation of savannah with cocoa agroforestry systems alters SOC content and distribution among particle size fractions (MAOC and POC). Found that land-use change results in substitution of C4-derived SOC... Read more
Key finding: Reviewed the critical role of stable humified soil organic matter in agroecosystem functioning, highlighting its influence on soil fertility, nutrient cycling, and contaminant mobility. Emphasized how SOM depletion under... Read more

2. What are the influences of land use, management practices, and soil properties on soil physicochemical characteristics and biogeochemical cycling?

This theme focuses on understanding how soil types, land-use systems (agriculture, forestry, urbanization), and specific management strategies such as tillage, irrigation, and afforestation impact soil physicochemical parameters (e.g., pH, salinity, nutrient content) and biogeochemical processes. The research addresses soil degradation, nutrient dynamics, pollution, and reclamation, essential for soil quality maintenance, crop productivity, and ecosystem resilience.

Key finding: Documented the chemical composition and salinity dynamics in irrigated Calcisols of Central Fergana, revealing organic matter depletion, high nitrogen content, and heterogeneous salt distribution influenced by irrigation... Read more
Key finding: Demonstrated that soil physicochemical properties including pH, organic carbon, electrical conductivity, and nutrient contents vary significantly among soil orders (entisols, inceptisols, alfisols) and land use systems... Read more
Key finding: Analyzed soils from five geologic formations revealing significant differences in texture, bulk density, porosity, pH, organic matter, and nutrient availability. This study underscores the influence of parent material and... Read more
Key finding: Showed that simplification of tillage systems (ploughless, no-till) over 25 years increased total nitrogen, carbon, and magnesium content, although acidification increased. Highlighted that tillage practice and pre-crops... Read more
Key finding: Characterized alkaline, saline, and calcareous soils with low organic matter and nutrient contents in an arid reclamation area. Linked soil chemical properties with fertility limitations and emphasized the need for targeted... Read more

3. How do plant-soil interactions, including competition and microbial metabolic processes, influence soil biogeochemical cycling and ecosystem functioning?

This emerging theme examines the role of interspecific plant competition and microbial metabolism in shaping soil biogeochemical properties such as nutrient availability, greenhouse gas flux, and sediment chemistry. It investigates how dominant species modulate soil conditions through changes in microbial activity and root-soil interactions, providing critical insights to improve ecosystem models and inform restoration and management strategies, especially under climate change.

Key finding: Established that pickleweed suppresses cordgrass stem density, which in turn weakens cordgrass’s influence on sediment biogeochemistry by increasing porewater ammonium concentrations. This demonstrates how plant-plant... Read more
Key finding: Confirmed that aboveground competition between Spartina foliosa and Sarcocornia pacifica alters cordgrass density and consequentially affects sediment porewater chemistry and iron fractionation. These findings emphasize the... Read more
Key finding: Utilized real-time PTR-TOF-MS volatile metabolite profiling to reveal enhanced microbial production of trimethylamine and intermediates of methylotrophic pathways following simulated snowmelt wet-up. Demonstrated coupling of... Read more
Key finding: Showed that technogenic disturbances in urban soils lead to significant physical, chemical, and biological degradation, with high heavy metal pollution inhibiting biological self-revitalization. This disruption compromises... Read more
Key finding: Reviewed sources and effects of diverse soil pollutants including metals, organic contaminants, and emerging pollutants, emphasizing their impacts on soil biogeochemistry and ecosystem functions. Highlighted sustainable... Read more

All papers in Soil biogeochemistry

Agricultural plastic mulch films are widely used in specialty crop production systems because of their agronomic benefits. Biodegradable plastic mulches (BDMs) offer an environmentally sustainable alternative to conventional polyethylene... more
A preliminary pot trial was conducted in a greenhouse to determine the effects of rubber effluent on some soil chemical properties as well as early growth and nutrient uptake by maize plant. The levels of rubber effluent used were 0, 50,... more
Soil organic carbon (SOC) plays a crucial role in mangrove blue carbon formation, yet the differences in microbemediated underlying SOC sequestration between introduced and native mangroves remain unclear. Here, we compared the SOC pool,... more
Afforestation of gramineous-woody savannah with cocoa agroforestry systems (cAFS) is a common farmer practice in Cameroon considered as sustainable. Nevertheless, the effects of afforestation of savannah with cAFS on soil organic carbon... more
Complete removal of carbonates from calcareous soil samples is critical for accurate measurement of the quantity and isotopic signature (d 13 C) of soil organic carbon (SOC). Carbonates confound SOC and d 13 C measurements because they... more
Farmers heavily rely on inorganic sources of fertilizers to replenish their farmlands, which in turn increase production and management cost further with subsidies removal. The cost and environmental implications of these inorganic... more
Use of animal manure-based soil amendments may offset the detrimental effects of slash-and-burn practice by smallholder farmers. Cattle dung is relatively more abundant but mineralizes slower and hence less effective than poultry... more
Ramnarine, R., Wagner-Riddle, C., Dunfield, K. E. and Voroney, R. P. 2012. Contributions of carbonates to soil CO2 emissions. Can. J. Soil Sci. 92: 599–607. Carbon dioxide (CO2) is released in soil as a by-product of microbial and root... more
The application of rice huskbiochar enriched with farm yard manure (cattle dung) as ameliorant to soils have shown benefits for production such as maize (Zea mays), shallot (Allium cepa), and peanut (Arachis hypogea), particularly through... more
Decomposing vertebrates, including humans, result in pronounced changes in surrounding soil biogeochemistry, particularly nitrogen (N) and carbon (C) availability, and alter soil micro-and macrofauna. However, the impacts of subsurface... more
Nitrogen is cycled throughout ecosystems by a suite of biogeochemical processes. The high complexity of the nitrogen cycle resides in an intricate interplay between reversible biochemical pathways alternatively and specifically activated... more
The effects of calcium hydrogen phosphate on lead (Pb) uptake by cowpea (Vigna unguiculata) were investigated in a growth chamber experiment coupled with atomic absorption spectrophotometry (AAS) and colorimetry analyses. Cowpea seeds... more
Mangrove plays a pivotal role in the nutrient biogeochemical processes by behaving as both source and sink for nutrients and other materials. Litter from mangroves added major part ofthe carbon and fresh water sources from estuary enrich... more
Purpose Biochar and inorganic fertilizer when co-applied have been reported to increase crop yield and enhance soil fertility. However, studies on this complementary effect on soil properties and rain-fed upland rice performance in... more
While there is significant evidence that the addition of organic residues to soils can improve overall soil fertility, it is unclear as to what organic residues will have the most beneficial impact. The use of residue chemistry as an... more
This study was conducted to assess the potentials of Azadirachta indica (L.) in the removal of heavy metal from soil contaminated with lead poisoning in Anka, Zamfara State. Soil and Azadirachta indica samples were collected and analyzed... more
Snowmelt dynamics are a significant determinant of microbial metabolism in soil and regulate global biogeochemical cycles of carbon and nutrients by creating seasonal variations in soil redox and nutrient pools. With an increasing concern... more
Snowmelt dynamics are a significant determinant of microbial metabolism in soil and regulate global biogeochemical cycles of carbon and nutrients by creating seasonal variations in soil redox and nutrient pools. With an increasing concern... more
Para analizar la dinámica del carbono orgánico de los suelos (COS) asociada a su cambio de uso, de vegetación y prácticas de manejo, es necesario desarrollar modelos para usarse en forma predictiva. Un enfoque de modelación es la... more
This study attempted to examine the effects of biochar amendment together with bio-fertilizer on soybean yield and its qualitative properties, as well as a few chemical properties of soil through a factorial randomized complete block... more
The need to maintain the rising numbers of both serviceable and degenerating automobiles in Nigeria has led to the springing up of vehicle workshops in approved and unapproved locations, where mechanics discharge spent engine oil... more
Background and Objectives: Nitrogen (N) fertilizer management with other soil amendments is crucial for optimal growth and productivity of grain crops. There has been increasing interest on converting rice straw to biochar and examining... more
It is well known that the hydrolysable tannin (tannin acid) and condensed tannins in a plant can influence the availability of soil nitrogen (N) through the formation of tannin-organic N complexes. However, the lack of research on the... more
Several studies in the temperate region have indicated that biofertilizer have the potential to improve soil properties but may also cause serious reduction in soil productivity. We studied the effects of biofertilizer and nutrient... more
A field experiment was conducted for 2 years (2019 and 2020) to determine the response to the application of Biochar (BC) obtained from the coffee pulp in combination with chemical fertilization (CF) in coffee trees. The established... more
A field experiment was conducted during kharif 2017-18 to investigate the impacts of azolla (Azolla pinnata) biofertilizer and urea on rice (Oryza sativa L.) yield, temporal soil P availability and improvement in soil acidity indices... more
and-conditions-of-access.pdf This article may be used for research, teaching and private study purposes. Any substantial or systematic reproduction, redistribution , reselling , loan or sub-licensing, systematic supply or distribution in... more
Soybean is grown in many parts of Northern Nigeria, with little climatic challenges and soil organic matter. There is need to investigate possible influence of planting date of the crop in Southeastern Nigeria, an environment that is... more
S4 Fig. Gene copy abundances of Total 16S rRNA (Bacteria), Bacteroides 16S rRNA (Bacteroides), and ITS (Fungi) within the grave. Bacteroides were below detection in all but the 70-75 cm samples.
Lead (Pb) accumulation in parts of maize plant as a possible route for Pb poisoning was investigated. Experimental design adopted was a 3 factorial combination (4 x 1 x 1). Prior to planting of seeds, soil sample was analyzed for its... more
Purpose Rice is a staple food in Nigeria, but its cultivation faces constraints of soil acidity, low soil fertility and rainfall variability. Research has shown that biochar has the potential to alleviate the effects of these conditions,... more
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The impact of plastic enriched composting on soil structure, fertility and growth of maize (Zea mays L.) was examined in this study. A completely randomized blocked design (RCBD) consisting of five treatments viz., A (Control, untreated... more
A field experiment was conducted to evaluate effect of biochar amended urea on nitrogen economy of soil for improving growth and yield of wheat under field condition. Experiment plan was comprised of twelve treatments with four... more
This study was conducted to monitor some area carbon in Adekunle Ajasin University Akungba (AAUA) Campus to encourage tree planting alongside her edifice and discourage high rate of deforestation. This study relies solely on the use of... more
A field experiment was conducted during kharif 2017-18 to investigate the impacts of azolla (Azolla pinnata) biofertilizer and urea on rice (Oryza sativa L.) yield, temporal soil P availability and improvement in soil acidity indices... more
Nitrogen is cycled throughout ecosystems by a suite of biogeochemical processes. The high complexity of the nitrogen cycle resides in an intricate interplay between reversible biochemical pathways alternatively and specifically activated... more
Two coryneform bacteria Arthrobacter sp. PI/1-95 (Arth1) and Arthrobacter sp. PI/3-95 (Arth3) were isolated from forest soil characterized and investigated with respect to their reaction towards aluminium (Al). Sigmoid functions were used... more
Purpose Soil acidity and nutrients deficiency are the major constraints causing low crop yield and food insecurity in the highlands of Ethiopia. A field experiment was conducted in northwestern Ethiopia during 2018 and 2019 cropping... more
Purpose Scarcity of effective manures frustrates the adoption of organic-based soil fertility management in tropical agriculture. Cattle dung (CD) is hugely generated but underutilised due to its high carbon-nitrogen ratio and low... more
This study aims to evaluate the impact of palm oil mill effluent treated with sodium carbonate on the growth of maize. The experiment consisted of eight treatments of concentrations of palm oil mill effluent viz 1.0%, 2.0%, 3.0%, 4.0%,... more
Human activities have degenerated nearly 40% of the universe soil through excessive chemical inputs, tilling and industrial activities. Biochar can increase soil fecundity, agricultural productivity and protects soil-borne diseases. This... more
The hydrogen isotope composition (δ<sup>2</sup>H) of biomarkers produced by algae is strongly influenced by the δ<sup>2</sup>H values of the water in which they grew. δ<sup>2</sup>H values of algal... more
The effect of Bioremediation on Early Seedling growth of Amaranthus hybridus L. on oil palm effluent polluted soil was carried out in the field using perforated polythene bags. The soil samples were polluted with 0, 80, 120 and 240ml of... more
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