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Figure 5: Split graphs illustrating split decomposition analysis of isolates based on sequences of the individual and concatenated protein-coding genes targeted in the study.

Figure 5 Split graphs illustrating split decomposition analysis of isolates based on sequences of the individual and concatenated protein-coding genes targeted in the study.

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Table 1: Presumed probiotic strains (19 in total) obtained from different sources. €10Z 2d9~O FZ 60:00 Fe [ABojouype,,, jo MistweaTIpN suemys,[] Aq popeotImogd
Table 1: Presumed probiotic strains (19 in total) obtained from different sources. €10Z 2d9~O FZ 60:00 Fe [ABojouype,,, jo MistweaTIpN suemys,[] Aq popeotImogd
Table 2: Names and sequences of primers used in the amplification of genes of the Lactobacillus isolates in a multilocus sequence approach.
Table 2: Names and sequences of primers used in the amplification of genes of the Lactobacillus isolates in a multilocus sequence approach.
ND, Not determined. Table 3: Probiotic isolates from different sources identified by 16S rRNA gene sequencing.
ND, Not determined. Table 3: Probiotic isolates from different sources identified by 16S rRNA gene sequencing.
Figure 1: The phylogenetic tree based on the 16S rDNA sequences (830 bp length) constructed using the neighbor-joining method. Bootstrap values of more than 60% are shown at the intern- odes. Single letters represent study isolates. Leuconostoc citreum CAG3 was the out group. Bar, 0.02 substitutions per site
Figure 1: The phylogenetic tree based on the 16S rDNA sequences (830 bp length) constructed using the neighbor-joining method. Bootstrap values of more than 60% are shown at the intern- odes. Single letters represent study isolates. Leuconostoc citreum CAG3 was the out group. Bar, 0.02 substitutions per site
Figure 2: The rooA gene phylogenetic tree constructed using the neighbor-joining method. Bootstrap values of more than 60% are shown at the internodes. Single letters represent study isolates. Lactococcus lactis subsp. cremoris GE214 (JF297383) rooted the tree. Bar, 0.05 substitutions per site
Figure 2: The rooA gene phylogenetic tree constructed using the neighbor-joining method. Bootstrap values of more than 60% are shown at the internodes. Single letters represent study isolates. Lactococcus lactis subsp. cremoris GE214 (JF297383) rooted the tree. Bar, 0.05 substitutions per site
Figure 3: The pheS gene phylogenetic tree constructed using the neighbor-joining method. Bootstrap values of more than 60% are shown at the internodes. Single letters represent study isolates. Bifidobacterium pseudolongum subsp. pseudolongum (AY174106) rooted the tree. Bar, 5% substitutions per site.
Figure 3: The pheS gene phylogenetic tree constructed using the neighbor-joining method. Bootstrap values of more than 60% are shown at the internodes. Single letters represent study isolates. Bifidobacterium pseudolongum subsp. pseudolongum (AY174106) rooted the tree. Bar, 5% substitutions per site.
*bold figures indicate estimated divergence between ‘coordinate’ isolates of the same cluster in the concatenated phylogenetic tree. Table 4: Estimated evolutionary divergence between combined chromosomal gene sequences.*
*bold figures indicate estimated divergence between ‘coordinate’ isolates of the same cluster in the concatenated phylogenetic tree. Table 4: Estimated evolutionary divergence between combined chromosomal gene sequences.*
Cx, concatenated chromosomal genes ; 16S#, 1685 rRNA gene; m = number of sequences, S = Number of segregating sites, Ps = S/m, 6 = Ps/a; z = nucleotide diversity and D = the Tajima test statistic. ible 5: Evolutionary divergence estimates and application of Tajima’s neutrality test in descriptive analysis of data used in MLSA.
Cx, concatenated chromosomal genes ; 16S#, 1685 rRNA gene; m = number of sequences, S = Number of segregating sites, Ps = S/m, 6 = Ps/a; z = nucleotide diversity and D = the Tajima test statistic. ible 5: Evolutionary divergence estimates and application of Tajima’s neutrality test in descriptive analysis of data used in MLSA.
Figure 4: Phylogenetic tree of the isolates (single letters) and retrieved sequences computed from the concatenated pheS and rpoA gene sequences by the neighborjoining method and the p-distance model. The out-group was Lactococcus lactis subsp. cremoris LMG 6897. Bar, 0.05 substitutions per nucleotide position.
Figure 4: Phylogenetic tree of the isolates (single letters) and retrieved sequences computed from the concatenated pheS and rpoA gene sequences by the neighborjoining method and the p-distance model. The out-group was Lactococcus lactis subsp. cremoris LMG 6897. Bar, 0.05 substitutions per nucleotide position.
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