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Protein carbonylation

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Protein carbonylation is a post-translational modification characterized by the covalent attachment of carbonyl groups to amino acid side chains in proteins. This modification is often associated with oxidative stress and can lead to altered protein function, aggregation, and degradation, playing a significant role in various diseases and aging processes.
lightbulbAbout this topic
Protein carbonylation is a post-translational modification characterized by the covalent attachment of carbonyl groups to amino acid side chains in proteins. This modification is often associated with oxidative stress and can lead to altered protein function, aggregation, and degradation, playing a significant role in various diseases and aging processes.

Key research themes

1. How do oxidative modifications, specifically protein carbonylation, arise and how can synthetic peptides model these modifications for biological study?

This theme explores the biochemical pathways and mechanisms leading to the formation of carbonyl groups on protein residues, notably through oxidative stress and metal-catalyzed oxidation. It addresses the challenges in characterizing such modifications due to their low abundance and diverse chemical nature, and focuses on the design and synthesis of stable, site-specific carbonylated peptides as models to understand the biological roles and disease implications of protein carbonylation.

Key finding: The authors developed an efficient solid phase synthesis method for peptides containing oxidized threonine (Thr(O)) residues, employing a fully protected unnatural amino acid derivative (Fmoc-Atda-OH). This strategy allows... Read more
Key finding: This study unveiled a novel method for detecting S-glycosylation on cysteine residues by leveraging silver-ion mediated oxidative hydrolysis under mild alkaline conditions. The method selectively cleaves S-glycosidic bonds... Read more

2. What are the structural and functional implications of carbohydrate–aromatic interactions in proteins, and how do these influence recognition and binding specificity?

This research area investigates the fundamental physicochemical forces underpinning protein-carbohydrate interactions, with a focus on non-covalent carbohydrate–aromatic residue contacts. It sheds light on the prevalence of aromatic residues like tryptophan in carbohydrate binding sites, the role of CH–π interactions, and the electronic complementarity driving glycan recognition, which are critical for glycoprotein function and therapeutic targeting.

Key finding: Through quantitative analysis of X-ray crystal structures, this work demonstrated that aromatic residues, especially tryptophan, are highly enriched in carbohydrate-binding pockets compared to aliphatic residues. It... Read more
Key finding: This paper discovered and characterized 'carbon bonds' (C-bonds) in proteins, a directional non-covalent interaction involving carbonyl-oxygen acceptors and sp3-hybridized carbon σ-hole donors via n→σ* orbital delocalization.... Read more
Key finding: The paper comprehensively reviewed C-mannosylation, a unique protein glycosylation involving covalent C–C bond formation between mannose and tryptophan residues, identifying the consensus WXXW motif required for enzymatic... Read more

3. How can carbon dioxide be efficiently converted and utilized as a carbonyl source in catalytic synthesis, enabling sustainable carbonylation of organic molecules?

This theme addresses catalytic strategies for the effective utilization of CO2 as a renewable C1 building block for organic synthesis, focusing on its reduction to CO and subsequent carbonylation reactions. The research highlights heterogeneous and homogeneous catalysts, alternative carbonyl surrogates including DMF, and the tandem conversion-carbonylation processes which circumvent the challenges posed by CO toxicity and handling, thus advancing green and sustainable synthetic methodologies.

Key finding: This study presented a two-step cascade catalytic process wherein CO2 is converted to CO using a copper-based heterogeneous catalyst (10Cu@SiO2-PHM) under mild conditions with high selectivity, and the generated CO is... Read more
Key finding: This review summarized advancements in the catalytic fixation of CO2 into alcohols and their derivatives via reductive carboxylation involving cleavage of C–O bonds. It highlighted transition-metal catalysis strategies that... Read more

All papers in Protein carbonylation

The region-specific mechanical function of left ventricular (LV) murine cardiomyocytes and the role of phosphorylation and oxidative modifications of myofilament proteins were investigated in the process of post-myocardial infarction (MI)... more
Use of wireless communicating devices is increasing at an exponential rate in present time and is raising serious concerns about possible adverse effects of microwave (MW) radiation emitted from these devices on human health. The present... more
Background: Detachment of photoreceptors from the underlying retinal pigment epithelium is seen in various retinal disorders such as retinal detachment and age-related macular degeneration and leads to loss of photoreceptors and vision.... more
Free radicals generated in a variety of biological systems have been implicated in mechanisms of aging and age-related pathologies. This study strategically revealed the varying levels of carbonylated proteins in 3 different tissues of 40... more
Background/aim-Age-related metabolic diseases are often associated with low-grade inflammation. The aim of the present study was to investigate the role of the transcriptional coactivator PGC-1α in the potential beneficial effects of... more
Immobilization induces oxidative damage to the brain. Ilex paraguariensis extracts (Mate) and chlorogenic acid (CGA), its major natural compound, exert protective effects against reactive oxygen species (ROS) formation. Here, the effects... more
Elevated mitochondrial reactive oxygen species have been suggested to play a causative role in some forms of muscle insulin resistance. However, the extent of their involvement in the development of diet-induced insulin resistance remains... more
BACKGROUND AND PURPOSE3,4‐Methylenedioxymethamphetamine (MDMA or ‘Ecstasy’) is a worldwide major drug of abuse known to elicit neurotoxic effects. The mechanisms underlying the neurotoxic effects of MDMA are not clear at present, but the... more
Atherosclerosis and valvular heart disease often require treatment with corrective surgery to prevent future myocardial infarction, ischemic heart disease, and heart failure. Mechanisms underlying the development of the associated... more
Background.Increased oxidative stress is a well described feature of patients in hemodialysis. Their need for multiple blood transfusions and supplemental iron causes a significant iron overload that has recently been associated with... more
Oxidative stress adaptation or hormesis is an important mechanism by which cells and organisms respond to, and cope with, environmental and physiological shifts in the level of oxidative stress. Most studies of oxidative stress adaption... more
Hyperglycemia-associated oxidative stress leads to various pathophysiological complications in diabetes mellitus. Here, the effects of Glycyrrhiza glabra (G. glabra) root extract of streptozotocin (STZ)-induced diabetic changes and the... more
Recent studies have shown benefits for the supplementation of folic acid in schizophrenic patients. The aim of this study was to evaluate the effects of folic acid addition on adult rats, over a period of 7 or 14 days. It also sets out to... more
Inanga (Galaxias maculatus) are a euryhaline and amphidromous Southern hemisphere fish species inhabiting waters highly contaminated in trace elements such as nickel (Ni). Ni is known to exert its toxic effects on aquatic biota via three... more
1) Background: Mucilage within cacao pods contains high levels of polyphenols. We investigated whether consumption of cacao juice enhances the recovery of muscle function following intensive knee extension exercise. (2) Methods: Ten... more
1) Background: Mucilage within cacao pods contains high levels of polyphenols. We investigated whether consumption of cacao juice enhances the recovery of muscle function following intensive knee extension exercise. (2) Methods: Ten... more
Chronic respiratory diseases such as obstructive pulmonary disease (COPD) and oxidative stress may underlie lung cancer (LC). We hypothesized that the profile of oxidative and antioxidant events may differ in lung tumors and blood... more
Cigarette smoking has been associated with high risk of neurological diseases such as stroke, Alzheimer's disease, multiple sclerosis, etc., The present study was designed to evaluate the restorative effects of Sesbania grandiflora (S.... more
IntroductionThe purpose of this study was to: (i) investigate the effect of six months of resistance training (RT) on body composition, muscle strength, hematological patterns, and redox profile in maintenance hemodialysis (HD) patients,... more
Inflammatory status is observed in patients with chronic renal failure (CRF). The relationship between oxygen free radical production and dialysis could play an important role in protein oxidation. Carbonyl protein plasma level is an... more
SummaryReactive oxygen and nitrogen species are involved in a plethora of cellular responses in plants; however, our knowledge on the outcomes of oxidative and nitrosative signaling is still unclear. To better understand how oxidative and... more
Increased cellular levels of reactive oxygen species are known to occur during seed development and germination, but the consequences in terms of protein degradation are poorly characterized. In this work, protein carbonylation, which is... more
Hydrogen peroxide (H 2 O 2 ) and nitric oxide ( • NO) elicit numerous processes in plants. However, our knowledge of H 2 O 2 and • NO-responsive proteins is limited. The present study aimed to identify proteins whose accumulation levels... more
A series of new hybrid 2-(diethoxyphosphoryl)-N-(benzylidene)propan-2-amine oxide derivatives with different aromatic substitution (PPNs) were synthesized. These molecules were evaluated for their EPR spin trapping potential on eleven... more
AimsOxidation of proteins is presumed to contribute to contractile dysfunction associated with partial outlet obstruction (PBOO) of the urinary bladder. The objective of this study was to determine the acute and chronic effects of PBOO on... more
Glycolaldehyde (GA) is a highly reactive aldehyde that can be generated during inflammation and hyperglycemia. It can react with arginine and lysine residues impairing protein function. As inflammation and diabetes present haemostatic... more
Background: Increased oxidative/nitrosative stress is important in the pathogenesis of diabetic complications, and the protective effects of antioxidants are a topic of intense research. The purpose of this study was to investigate... more
This study investigated the effect of astaxanthin (ASX; 3,3-dihydroxybeta, beta-carotene-4,4-dione), a water-dispersible synthetic carotenoid, on liver ischemia-reperfusion (IR) injury. Astaxanthin (5 mg/kg/day) or olive oil was... more
There is evidence for the role of oxidative stress in severe dengue pathogenesis. However, previous observational studies presents certain methodological limitations, which may affect its internal and external validity. This study was a... more
Aims: Melanoma is the most aggressive type of malignant skin cancer derived from uncontrolled proliferation of melanocytes. Melanoma cells possess a high potential to metastasize, and the prognosis for advanced melanoma is rather poor due... more
The aim of this study was to investigate changes in dietary intake, anthropometric parameters and markers of oxidative stress in 40 women who underwent surgery, chemotherapy or radiation therapy for breast cancer. Pretreatment and... more
Pneumococcal meningitis is associated with a significant mortality rate and neurologic sequelae. The animals received either 10 μL of saline or a S. pneumoniae suspension and were randomized into different groups: sham: placebo with... more
To analyze the oxidative damage and histopathological alterations caused by ischemia-reperfusion (I/R) injury and ameliorative effects of carvedilol (CVD) in the rat testis. Twenty-one male rats were randomized into 3 groups as follows:... more
1-Methylnicotinamide (MNA), a major endogenous metabolite of nicotinamide, possesses anti-thrombotic and anti-inflammatory activity, and reverses endothelial dysfunction. In the present work, we investigated whether such a vasoprotective... more
Oxidative stress is known by excess production of reactive species, especially (ROS) and deleterious modifications in biomolecules such as proteins, and lipid mainly. It is a common mediator in pathogenesis of multiple diseases. Because... more
The development of cognitive impairment in sepsis is associated with neurotoxic effects caused by oxidative stress. We have assessed the effects of acute and extended administration of guanosine (GUA) on brain oxidative stress parameters... more
The present study aimed to evaluate cardio-protective effect of Nigella sativa oil (NSO) on lead induced cardio toxicity. Forty five albino adult rats were randomly divided into 3 groups: control lead (Pb) group that received lead acetate... more
A number of C-3 spirocyclic 2-benzazepine analogs of a-phenyl-N-tert-butyl nitrone (PBN) were synthesized and tested for their activity in protecting rat brain mitochondria and dopaminergic (DA) neurons against 6-hydroxydopamine (6-OHDA),... more
Saccharomyces cerevisiae was used to uncover the mechanisms underlying tolerance and toxicity of the agricultural fungicide mancozeb, linked to cancer and Parkinson's disease development. Chemogenomics screening of a yeast deletion mutant... more
Alkaptonuria (AKU) is a rare genetic disease associated with the accumulation of homogentisic acid (HGA) and its oxidized/polymerized products in connective tissues up to the deposition of melanin-like pigments (ochronosis). Since little... more
Interaction between antigen presenting cells and T lymphocytes, through receptors and co-stimulatory molecules present on the surface of these cells, is one of the key means to modulate the adaptive immune system. Tucaresol, a... more
To clarify the effects of selenium, parameters related to oxidative issues, as well as the antioxidant response were investigated on an autochthonous wine yeast strain. Antioxidant enzyme activity, Gel electrophoresis, Western Blot and... more
LCA and 1,25(OH)2D3 are vitamin D receptor ligands with different binding affinity. The secosteroid stimulates intestinal Ca(2+) absorption. Whether LCA alters this process remains unknown. The aim of our work was to determine the effect... more
The aim of this study was to establish the protective effect of caffeic acid phenethyl ester (CAPE) against the ifosfamide (IFOS)-induced central neurotoxicity in rats and to determine the changes in oxidant-antioxidant status of brain... more
Aim: This study investigated the protective effects of sildenafil (SIL) and resveratrol (RSV) on ovarian ischemia-reperfusion (I/R) injury. Materials and methods: Forty-Eight Wistar albino rats were divided equally into groups: control... more
The healing activity of the methanol extract of the spice rampatri, Myristica malabarica, (RM) and omeprazole against indometacin-induced stomach ulceration has been studied in a mouse model. Treatment with RM (40 mg kg−1 per day) and... more
Differential proteomics is considered as one of the most powerful tools for evaluating relative expression of molecular moieties either in plants or animals. The present study focuses first on optimizing a rapid and sensitive protocol for... more
The cnidarian-dinoflagellate symbiosis is a mutualistic intracellular association based on the photosynthetic activity of the endosymbiont. This relationship involves significant constraints and requires co-evolution processes, such as an... more
Cystinosis is a systemic genetic disease caused by a lysosomal transport deficiency accumulating cystine in most tissues. Tissue damage depends on cystine accumulation, but the mechanisms of this damage are still obscure. Cysteamine... more
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