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Microscopic Simulation

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lightbulbAbout this topic
Microscopic simulation is a computational method used to model and analyze the behavior of systems at the microscopic level, focusing on individual particles or agents. It employs algorithms to simulate interactions and dynamics, providing insights into complex phenomena in fields such as physics, chemistry, and biology.
lightbulbAbout this topic
Microscopic simulation is a computational method used to model and analyze the behavior of systems at the microscopic level, focusing on individual particles or agents. It employs algorithms to simulate interactions and dynamics, providing insights into complex phenomena in fields such as physics, chemistry, and biology.

Key research themes

1. How can multiscale modeling frameworks integrate microscopic simulations to capture complex biological phenomena effectively?

This research theme addresses the challenge of representing biological molecules, cells, and entire cellular environments across multiple spatial and temporal scales using microscopic simulations. It explores methodological advances to bridge atomistic to mesoscopic scales, providing detailed structural, mechanical, and dynamical insights into biological systems. Such approaches enable understanding of phenomena that span quantum to cellular timeframes, critical for accurate modeling of DNA dynamics, cellular behavior, and biomolecular interactions.

Key finding: This review presents a hierarchy of theoretical methods for DNA ranging from electronic (quantum mechanical) to mesoscopic scales, underscoring the necessity of combining ultrafast, sub-angstrom electron dynamics with... Read more
Key finding: This work demonstrates the development of an integrative coarse-grained molecular dynamics simulation of the minimal cell JCVI-syn3A at near-atomic resolution, incorporating millions of particles and realistic cellular... Read more
Key finding: Tissue Forge offers an open-source framework enabling multiscale particle-based simulations from molecular to multicellular scales with dynamic, real-time interactivity. It combines classical molecular dynamics with... Read more

2. What are the numerical methods and computational tools developed for approximating and managing complex microscopic simulations in systems with no closed-form macroscopic models?

This theme captures recent advances in computational methodologies and software tools that approximate macroscopic dynamics from microscopic simulators when explicit continuum equations are unavailable. It focuses on novel numerical techniques for stable and unstable manifold approximation, surrogate modeling with neural networks, and frameworks that bridge scales without deriving closed-form macroscopic equations. The theme also encompasses software supporting coarse-grained model construction, facilitating flexibility and scalability in simulations for complex biological and physical systems.

Key finding: Introduces a three-tier equation-free numerical scheme to approximate coarse-grained stable and unstable manifolds of saddle equilibria in multiscale systems, using short bursts of microscopic simulations without requiring... Read more
Key finding: The study develops physics-informed neural network architectures guided by stochastic numerical integrators (Euler-Maruyama, Milstein) to learn drift and diffusion terms of effective coarse-grained stochastic differential... Read more
Key finding: Moltemplate introduces a domain-specific language and toolkit for building and simulating coarse-grained molecular models compatible with LAMMPS, enabling flexible, reusable, and user-readable construction of complex... Read more
Key finding: Describes the development of SimPlus, an object-oriented C++ simulation tool emphasizing ease of use, extensibility, and modern software design patterns like Singleton and callback automation. While initially a student... Read more

3. How can interactive visualization and virtual reality technologies enhance the comprehension and teaching of microscopic and nanoscale phenomena simulated computationally?

This theme explores the role of advanced visualization tools and immersive virtual reality (VR) environments in bridging the gap between abstract microscopic/nanoscale simulation data and human understanding. It reviews innovative software and VR platforms that translate simulation outputs into intuitive, interactive, and stereoscopic experiences for education and research, thereby facilitating conceptual understanding of spatial molecular arrangements, dynamic processes, and nanoscale properties for students and researchers.

Key finding: Introduces vmdMagazine, a VMD plugin that converts molecular dynamics simulation data into high-quality, interactive 3D video animations usable in educational contexts. It emphasizes the pedagogical value of visualizing... Read more
Key finding: Presents development of immersive 3D VR nanoscale simulations using large-scale PowerWall VR systems where users can interactively explore nanomaterial structures and phenomena such as nanotube chirality and scale. The study... Read more
Key finding: Investigates teachers’ conceptions regarding modeling nanoscale science for education, emphasizing use of models beyond static representations toward design and inquiry-based learning. The work highlights the need for models... Read more

All papers in Microscopic Simulation

How automated speed enforcement may reduce travel time variability and result in travel time savings : the case study of the loop 101 speed enforcement program in Scottsdale, Arizona.
To increase operational efficiency, resilience and capacity of the railway system, the development of modern railway traffic management system (TMS) has attracted more and more attention in recent years. To support the development and... more
This study will analyse the effect the road traffic and travel situation is highly aggravated in metropolitan cities of developing country like India because of significant growth in traffic and addition of more and more numbers of... more
This study will analyse the effect the road traffic and travel situation is highly aggravated in metropolitan cities of developing country like India because of significant growth in traffic and addition of more and more numbers of... more
This study will analyse the effect the road traffic and travel situation is highly aggravated in metropolitan cities of developing country like India because of significant growth in traffic and addition of more and more numbers of... more
Deceleration characteristics of vehicles are important for intersection design, deceleration lane design, traffic simulation modeling, vehicular emission and fuel consumption modeling, etc. Heterogeneous traffic stream consists of... more
This paper describes the state of advancement achieved in the OptiYard research project in the use of optimisation algorithms in interaction with microsimulation of the rail-yard and surrounding network towards real-time yard management... more
Over the years the characteristics of traffic on Dutch motorways has changed, but its design guidelines did not develop as rapidly and large parts remain unchanged since the first guidelines from the 1970s. During the latest revision of... more
h i g h l i g h t s An automated VISSIM calibration tool, VISCAL, is developed supporting three heuristic optimization algorithms. VISCAL can test the significance of the appropriate decision parameter set for a particular network. VISCAL... more
This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY
Safe driving can be achieved by prevention of risky situations which requires the knowledge of the vehicle dynamics and road geometry. The Indian traffic condition is heterogeneous in nature and has weak lane discipline. Hence, vehicles... more
During the peak hour, drivers are occasionally allowed to use the shoulder lane on the Kanjanapisek Expressway to provide additional space and reduce travel delay. Based on the observation, we found a significant number of vehicles... more
In this letter, we detail a modular approach for measuring the secondary physical and emotional effects of ambient intelligence (AmI) technology in traffic. Using the case of merges on to a highway, we assess the results of a system that... more
The car following behaviour of a driver is the process of following the drivers to create an adjustment in the leading vehicle behaviour. In a condition, where the traffic volume is in a free-flowing situation, the selection of vehicles... more
Modeling effective vehicular traffic is a highly contested topic, especially in developing countries like Sri Lanka, which has a wide range of driving conditions. VISSIM microsimulation software is currently used by Road Development... more
Sodoben življenjski slog zahteva visoko stopnjo mobilnosti, ki se odraža v povečanih prometnih obremenitvah. Na nekaterih najbolj obremenjenih avtocestnih odsekih dnevno prihaja do zastojev, kar daje vodenju prometačedalje izrazitejšo... more
Indian traffic can be considered as chaotic, with various types of vehicles present with no lane discipline. In order to model Indian traffic condition, it is necessary to incorporate both the v conditions in a meaningful way. Research... more
Modeling effective vehicular traffic is a highly contested topic, especially in developing countries like Sri Lanka, which has a wide range of driving conditions. VISSIM microsimulation software is currently used by Road Development... more
Traffic microsimulation is increasingly a preferred method of traffic analysis for today's transportation professionals. The importance of properly calibrating these traffic simulations is evidenced by the adoption of microsimulation... more
Traditionally, road safety analysis has been conducted by analysing collision records, which has a reactive approach as the analyst waits for collisions to occur. The alternate proactive approach in the form of surrogate safety measures... more
The car following behaviour of a driver is the process of following the drivers to create an adjustment in the leading vehicle behaviour. In a condition, where the traffic volume is in a free-flowing situation, the selection of vehicles... more
Car-following models are used in microscopic simulation tools to calculate the longitudinal acceleration of a vehicle based on the speed and position of a leading vehicle in the same lane. Bicycle traffic is usually included in... more
The use of microscopic traffic simulation models in traffic operations, transportation design, and transportation planning has become widespread across the United States because of: (i) rapidly increasing computer power; (ii) the... more
During the peak hour, drivers are occasionally allowed to use the shoulder lane on the Kanjanapisek Expressway to provide additional space and reduce travel delay. Based on the observation, we found a significant number of vehicles... more
As the world population and the traffic demand are constantly inflating, there is a substantial need to procure a safe and effective method for traffic control and management. Thus, traffic signals operate to manage the flow of vehicles... more
In this paper, we first review a localized ramp-metering strategy for freeways that achieves the goal of reducing the spatial and temporal span of traffic congestion, using locally available information. The control scheme is composed of... more
Many pieces of research have concentrated on traffic speed, time headway, space headway, and so on under non-lane-based heterogeneous traffic streams. In contrast, limited studies have been conducted for analyzing and modeling the... more
In this letter, we detail a modular approach for measuring the secondary physical and emotional effects of ambient intelligence (AmI) technology in traffic. Using the case of merges on to a highway, we assess the results of a system that... more
In urban areas, interchange spacing and the adequacy of design for weaving, merge, and diverge areas can significantly influence available capacity. Traffic microsimulation tools allow detailed analyses of these critical areas in complex... more
In urban areas, interchange spacing and the adequacy of design for weaving, merge, and diverge areas can significantly influence available capacity. Traffic microsimulation tools allow detailed analyses of these critical areas in complex... more
In the present study, quantification of level of service for four-lane divided highway has been performed by using simulation technique. For the purpose, three operational service measures are proposed in the study namely traffic stream... more
Comprehensive analysis of traffic behavior requires continuous studies to develop traffic theories explaining that behavior at the microscopic level. The study aims to develop a microsimulation program to evaluate the freeway weaving... more
The research identifies the dynamical parameters in the area of mechanics within the base of traffic model parameters used by the Intelligent Driver Model (IDM), which are the highest acceleration parameters set by the vehicle, the... more
Pedestrian unrestrained behaviour, sudden movements and vulnerability are elements, which can highly affect road safety, especially when interacting with motorized vehicles. Therefore, it is important to have a deep insight in pedestrian... more
Any transport facility is essentially a service being provided to the society. Therefore, it is expected of the traffic engineers, transport planners and policy-makers alike to be able to understand and evaluate the quality of service... more
The major factor affecting road-user costs (RUC) is the speed at which vehicles operate on roads which in turn determines fuel consumption and other cost components per unit distance travelled. Thus vehicular speed plays a significant... more
Mixed traffic, characterized by diverse vehicles, changing composition, lack of lane discipline, etc. is best modeled by micro simulation. However, the majority of the leading micro simulation packages and their calibration methodologies... more
Mixed traffic, characterized by diverse vehicles, changing composition, lack of lane discipline, etc. is best modeled by micro simulation. However, the majority of the leading micro simulation packages and their calibration methodologies... more
Mixed traffic, characterized by diverse vehicles, changing composition, lack of lane discipline, etc. is best modeled by micro simulation. However, the majority of the leading micro simulation packages and their calibration methodologies... more
Heavy-Duty Vehicles (HDVs) on highways are among the major passengers and freight traffic carriers that occupy any space available on the roadway. The movement of HDVs under the mixed traffic environment causes higher levels of... more
Traffic microsimulation is increasingly a preferred method of traffic analysis for today's transportation professionals. The importance of properly calibrating these traffic simulations is evidenced by the adoption of microsimulation... more
Traffic flow is a complex phenomenon that needs better understanding of basic concepts and methods for its analysis. As a solution to practical problems, computer simulation has been proved to be a powerful tool in replicating complex... more
The present study uses the microscopic traffic simulation flow model VISSIM for generating traffic flow data to obtain the essential parameters. Study calibrated and validated the VISSIM model based on the field data. Further, lane change... more
The Impact of Autonomous Vehicles on Freeway Throughput Abdullah Maarafi Autonomous vehicles are expected to provide a number of benefits to the individual, road infrastructure and the society from the perspective of safety and... more
In this letter, we detail a modular approach for measuring the secondary physical and emotional effects of ambient intelligence (AmI) technology in traffic. Using the case of merges on to a highway, we assess the results of a system that... more
In this letter, we detail a modular approach for measuring the secondary physical and emotional effects of ambient intelligence (AmI) technology in traffic. Using the case of merges on to a highway, we assess the results of a system that... more
Simulation today is one of the most used tools in science and engineering. Traffic engineering is no exception. Simulators to be usable passes through processes of verification, validation and calibration. All simulators are based on... more
Car-following models are used in microscopic simulation tools to calculate the longitudinal acceleration of a vehicle based on the speed and position of a leading vehicle in the same lane. Bicycle traffic is usually included in... more
Comprehensive analysis of traffic behavior requires continuous studies to develop traffic theories explaining that behavior at the microscopic level. The study aims to develop a microsimulation program to evaluate the freeway weaving... more
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