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Isochorismate Synthase

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lightbulbAbout this topic
Isochorismate synthase is an enzyme that catalyzes the conversion of chorismate to isochorismate, a key intermediate in the biosynthesis of various aromatic compounds, including certain antibiotics and plant hormones. It plays a crucial role in the shikimic acid pathway, which is essential for the production of aromatic amino acids in microorganisms and plants.
lightbulbAbout this topic
Isochorismate synthase is an enzyme that catalyzes the conversion of chorismate to isochorismate, a key intermediate in the biosynthesis of various aromatic compounds, including certain antibiotics and plant hormones. It plays a crucial role in the shikimic acid pathway, which is essential for the production of aromatic amino acids in microorganisms and plants.

Key research themes

1. How can metabolic and synthetic biology strategies optimize isoprenoid biosynthesis pathways in yeast and cyanobacteria for industrial production?

This research area focuses on developing engineered microbial platforms, particularly yeast (Saccharomyces cerevisiae) and cyanobacteria (Synechococcus elongatus), for enhanced production of isoprenoids—a broad class of industrially valuable terpenoids. Important aspects include rewiring central carbon metabolism to optimize precursor acetyl-CoA supply, improving energy/redox balance, balancing competing pathway fluxes, and heterologous expression of key enzymes like isoprene synthase. Constraints addressed involve cofactor specificity, carbon conservation, and pathway bottlenecks relevant for scalable commodity bio-production.

Key finding: This study demonstrates successful metabolic rewiring in Saccharomyces cerevisiae by integrating four non-native enzymatic reactions (phosphoketolase, phosphotransacetylase, acetaldehyde dehydrogenase, and an NADH-specific... Read more
Key finding: This review highlights synthetic biology strategies that augment isoprenoid yields in yeast by engineering central carbon metabolism and the mevalonate (MVA) pathway. Key insights include augmenting acetyl-CoA supply,... Read more
Key finding: This study introduces a metabolic inhibition strategy in cyanobacteria Synechococcus elongatus UTEX 2973, overexpressing heterologous isoprene synthase (IspS) and isopentenyl diphosphate isomerase (IDI), to enhance isoprene... Read more
Key finding: This work demonstrates heterologous expression of plant isoprene synthases (IspSs) in the green microalga Chlamydomonas reinhardtii with plastidic and nuclear localization, enabling direct phototrophic production of volatile... Read more

2. What molecular and enzymatic insights define the specificity and function of key isoprenoid pathway enzymes such as isochorismate synthase, farnesyl diphosphate synthase, and hydroxymethylbutenyl diphosphate synthase?

This research theme investigates the biochemical properties, regulation, and structural determinants of critical enzymes in isoprenoid biosynthesis. Studies include characterization of multiple isozymes (e.g., Arabidopsis thaliana isochorismate synthases ICS1 and ICS2), substrate specificity and active site residues of farnesyl diphosphate synthase (FPPS), and functional amino acids in hydroxymethylbutenyl diphosphate synthase (HDS) governing MEP pathway flux and signaling. Understanding these enzyme functions illuminates pathway regulation, metabolic flux control, and potential drug targeting points.

Key finding: This study biochemically characterizes both Arabidopsis ICS isozymes, AtICS1 and AtICS2, expressed recombinantly. It establishes that AtICS2 is enzymatically active for the first time and reveals both ICS1 and ICS2 require... Read more
Key finding: This comprehensive biochemical review elucidates how specific amino acid residues proximal to the first aspartate-rich motif in farnesyl diphosphate synthase (FPPS) govern product chain length specificity between GPP, FPP,... Read more
Key finding: Through a suppressor screen in Arabidopsis, this study identifies three conserved amino acid substitutions in hydroxymethylbutenyl diphosphate synthase (HDS) that differentially restore phenotypes of a mutant accumulating... Read more

3. How do enzyme structure and reaction mechanisms dictate specialized biosynthesis and functionalization of isoprenoids and related moieties such as isonitriles and isomeric amino acids?

This theme centers on elucidating biosynthetic enzymology of less common isoprenoid-related modifications and analogs critical in natural product diversification and drug discovery. It includes computational and experimental studies on enzymes catalyzing isonitrile formation (e.g., ScoE), chemical and enzymatic pathways to chiral isomers like L-allo-isoleucine, and chemical synthesis routes generating iso-fatty acid derivatives. Insight into these mechanisms deepens understanding of enzyme flexibility, substrate positioning, and catalytic cycles influencing structural complexity in bioactive metabolites.

Key finding: Using computational modeling of the nonheme iron(II)/α-ketoglutarate-dependent dioxygenase ScoE, this study elucidates the stepwise oxidative mechanism converting γ-glycine containing substrates to isonitrile functional... Read more
Key finding: This work identifies and characterizes two enzymatic pairs (DsaD/DsaE and MfnO/MfnH), comprising a pyridoxal 5'-phosphate-dependent aminotransferase and a novel isomerase, responsible for biosynthesis of the rare... Read more
Key finding: This synthetic study delivers efficient, scalable gram-scale methods for terminally-branched iso-fatty acids ranging from C12 to C19, starting from commercially available methyl undecylenate and lactones. The approach... Read more

All papers in Isochorismate Synthase

We have recently shown that an Arabidopsis thaliana double mutant of type III phosphatidylinositol-4-kinases (PI4Ks), pi4kβ1β2, constitutively accumulated a high level of salicylic acid (SA). By crossing this pi4kβ1β2 double mutant with... more
The isochorismate synthase DhbC from Bacillus anthracis is essential for the biosynthesis of the siderophore bacillibactin by this pathogenic bacterium. The structure of the selenomethionine-substituted protein was determined to 2.4 Å... more
Background and Aims We have recently shown that an Arabidopsis thaliana double mutant of type III phosphatidylinositol-4-kinases (PI4Ks), pi4kβ1β2, constitutively accumulated a high level of salicylic acid (SA). By crossing this pi4kβ1β2... more
Background and Aims We have recently shown that an Arabidopsis thaliana double mutant of type III phosphatidylinositol-4-kinases (PI4Ks), pi4kβ1β2, constitutively accumulated a high level of salicylic acid (SA). By crossing this pi4kβ1β2... more
Background: pABA biosynthesis is a potential target for antifolate drugs. Results: Rubreserine inhibits GAT-ADCS, an enzyme involved in pABA biosynthesis, and decreases the folate content in Arabidopsis and Toxoplasma. Conclusion:... more
Background: pABA biosynthesis is a potential target for antifolate drugs. Results: Rubreserine inhibits GAT-ADCS, an enzyme involved in pABA biosynthesis, and decreases the folate content in Arabidopsis and Toxoplasma. Conclusion:... more
Safflower (Carthamus tinctorius L.) serves as a reference dicot for investigation of defence mechanisms in Asteraceae due to abundant secondary metabolites and high resistance/tolerance to environmental stresses. In plants,... more
Background: pABA biosynthesis is a potential target for antifolate drugs. Results: Rubreserine inhibits GAT-ADCS, an enzyme involved in pABA biosynthesis, and decreases the folate content in Arabidopsis and Toxoplasma. Conclusion:... more
Responses of barley seedlings to water deficit (WD) induced by polyethylene glycol (PEG 6000) and ultraviolet (UV-B; 280-320 nm) radiation and their interaction (UV-B ? WD) were examined. A decrease in dry matter yield and water content... more
Salicylic acid (SA) and its derivatives are the most widely known drugs in the world used to reduce pain and fever, helping to treat many inflammatory diseases, in the prevention of coronary heart disease and heart attacks, and in tumor... more
The aim of the paper was to determine the effect of water deficit (WD) and UV-B radiation acting individually and in combination on salicylic acid (SA) accumulation as well as on the activity of phenylalanine ammonia-lyase (PAL) and... more
The aim of the paper was to determine the effect of water deficit (WD) and UV-B radiation acting individually and in combination on salicylic acid (SA) accumulation as well as on the activity of phenylalanine ammonia-lyase (PAL) and... more
Ozone (O3), a major photochemical oxidant, induces leaf injury concomitant with salicylic acid (SA) synthesis. In pathogen-infected leaves, SA is synthesized via two pathways, involving phenylalanine or isochorismate. SA biosynthesis... more
Bernard (1813-1878) is famous for his discoveries in physiology and for introducing rigorous experimental methods to medicine and biology. One of his major technical innovations was the use of chemicals in order to disrupt normal... more
Salvia mirzayanii and Salvia macrosiphon are medicinal and aromatic plants belonging to the Lamiaceae family, which have many pharmaceutical properties. In the present study, the nucleic acid sequences of small-subunit ribosomal RNAs (18s... more
Salicylic acid (SA) is a prominent signaling molecule during biotic and abiotic stresses in plants biosynthesized via cinnamate and isochorismate pathways. Cinnamate 4-hydroxylase (C4H) and isochorismate synthase (ICS) are the main... more
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