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Eukaryotic microbiology

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lightbulbAbout this topic
Eukaryotic microbiology is the study of microorganisms that possess a defined nucleus and membrane-bound organelles, including protists, fungi, and certain algae. This field explores their biology, ecology, evolution, and interactions with other organisms, contributing to our understanding of biodiversity and the roles these organisms play in various ecosystems.
lightbulbAbout this topic
Eukaryotic microbiology is the study of microorganisms that possess a defined nucleus and membrane-bound organelles, including protists, fungi, and certain algae. This field explores their biology, ecology, evolution, and interactions with other organisms, contributing to our understanding of biodiversity and the roles these organisms play in various ecosystems.

Key research themes

1. How does genetic and molecular analysis advance understanding and taxonomy of microbial eukaryotes?

This research area focuses on leveraging genome sequencing, molecular markers, and phylogenomic methodologies to resolve the taxonomy, evolutionary positioning, and diversity of microbial eukaryotes. Precise classification and understanding of microbial eukaryotes are essential for studying biodiversity, ecological functions, and evolutionary history, especially given the limitations of traditional morphology-based taxonomy and the difficulty in cultivating many protists. This theme encompasses the use of genomic data for taxonomy, phylogenetic placement using bacterial-origin proteins, and metabarcoding for community structure, offering robust tools to study these complex organisms.

Key finding: Although focused on prokaryotes, this paper sets rigorous minimal standards for the quality and use of genome data in taxonomy, advocating the use of whole genome sequence data and metrics such as Average Nucleotide Identity... Read more
Key finding: By revising and expanding datasets of eukaryotic proteins of bacterial origin using phylogenomic methods, this study identifies a consistent root of the eukaryotic tree of life between 'Unikonta' (renamed Opimoda) and... Read more
Key finding: Using 18S rRNA V4 metabarcoding, this study reveals comprehensive protist diversity across water, sediment, and biofilm habitats in a temperate lake ecosystem, highlighting Stramenopiles as the dominant diverse group and... Read more

2. What roles do microbial eukaryotes play in host-associated microbiota and environmental microbiomes?

This theme investigates the composition, detection, and functional significance of microbial eukaryotes within host-associated microbiomes such as the human gastrointestinal tract, and in environmental microbiomes including aquatic systems. Understanding eukaryotic members of microbiomes expands the holistic view of microbiota beyond bacteria and archaea, revealing their roles in health, disease, and ecosystem functioning. Methodological advances in molecular detection and microbial characterization underpin this research.

Key finding: This paper comprehensively reviews methodological advancements for detecting eukaryotes in the human gut, emphasizing the shift from traditional parasitological approaches to molecular DNA-based techniques such as direct... Read more
Key finding: While primarily focused on gut bacterial communities, this review contextualizes the mutualistic relationships between host and microbiota, including eukaryotic components, and underscores how imbalances (dysbiosis) affect... Read more
Key finding: Although encompassing all microbial domains, this database provides curated physiological and ecological characteristics of microbes including fungi and protozoa, facilitating interpretation of metagenomic data. By... Read more
Key finding: This work synthesizes current research on the gut microbiota's influence on systemic diseases, including neurodegenerative disorders, and discusses specific shifts in microbial taxa including eukaryotic species. It elucidates... Read more

3. How do molecular and genetic studies inform the biology, ecology, and pathogenicity of specific eukaryotic microbes and their interactions?

This theme covers targeted molecular characterization of specific microbial eukaryotes, elucidation of their bioactive molecules, virulence factors, and host-parasite relationships, along with ecological surveys of their distribution. Detailed biochemical, genomic, and ecological investigations provide insights into adaptations, infection mechanisms, molecular dialogue, and evolutionary developments of individual taxa. These studies enhance understanding of microbial eukaryote roles in ecosystems, disease processes, and biotechnological potential.

Key finding: This paper demonstrates that cpdB-like genes encoding 3'-nucleotidase/phosphodiesterase activities are widespread and associated with virulence in bacterial pathogens, with enzymatic activity differences linked to... Read more
Key finding: The review details three classes of bioactive molecules produced by ciliates—pheromones (water-borne signaling proteins), lipophilic terpenoids (membrane-associated molecules mediating interspecies competition), and cortical... Read more
Key finding: Focusing on Paramecium and Tetrahymena ciliates, this study identifies and characterizes key molecular players, including diverse SNARE proteins, Ca2+-regulatory proteins, and monomeric GTPases governing membrane trafficking.... Read more
Key finding: The successful isolation and genotypic characterization of a non-archetypal T. gondii strain (ToxoDB #206) from a captive neotropical primate is reported, expanding knowledge of parasite diversity and distribution in... Read more
Key finding: This study analyzes infection dynamics of two apicomplexan symbionts in the marine polychaete Pygospio elegans, finding no significant association between host genetic diversity or heterozygosity and infection prevalence or... Read more

All papers in Eukaryotic microbiology

ABSTRACT. Ichthyobodo necator is an important fish ectoparasite with a broad host and ecological range. A novel method, involving the use of an anesthetic, allowed the collection of large numbers of parasites from the skin and gills of... more
Molecular phylogenetic analysis of 18S rRNA gene sequences of nearly any species of Chytridiomycota has typically challenged traditional classification and triggered taxonomic revision. This has often led to the establishment of new taxa... more
ABSTRACT. Dinoflagellates have among the largest nuclear genomes known, but we know little about their contents or organisation. Given the interest in dinoflagellate ecology, cell biology, and evolutionary biology, there are many reasons... more
Several species of microsporidia can cause disease in humans in both immunocompromised and immunocompetent individuals. Enterocytozoon bieneusi and Encephalitozoon intestinalis are most commonly associated with chronic diarrhea. All... more
Introduction: Schistosomiasis is a public health concern and there is a need for reliable field-compatible diagnostic methods in endemic settings. The AiDx Assist, an artificial intelligence (AI)-based automated microscope, has shown... more
Microsporidium rhabdophilum sp. n. (Microsporida : Pansporoblastina) is described from the microbotrophic nematode Rhabditis mny-iophila Poinar. This microsporidian normally infects the hypodermal and reproductive tissues of the nematode.... more
Many high-quality genomes are available for dixenous (two hosts) trypanosomatid species of the genera Trypanosoma, Leishmania, and Phytomonas, but only fragmentary information is available for monoxenous (single-host) trypanosomatids. In... more
This study examines the mediating effect of fairness perceptions in the relationship between two-way communication in pay system and job satisfaction. Although the relationship between such variables has been generally investigated, the... more
ABSTRACT. Reverse transcription PCRs (RT‐PCRs), real‐time RT‐PCRs and microarrays containing 50‐mer oligonucleotides representing nucleus‐encoded genes for chloroplast proteins from Euglena gracilis were used to compare light‐ and... more
Sex chromosome genes control sex determination and differentiation, but the mechanisms of sex determination in birds are unknown. In this study, we analyzed the gene FEM1C which is highly conserved from Caenorhabditis elegans to higher... more
Chemoattraction of Tetrahymena pyriformis, strain GL, was measured during starvation and under different growth conditions. Log phase cells starved in buffer are attracted by certain amino acids, peptides, and proteins. Cysteine,... more
Mycobacterium bovis bacillus Calmette-Gue´rin (BCG) has been used as a live bacterial vaccine to immunize more than 2 billion people against tuberculosis. In an attempt to use this vaccine strain as a vehicle for protective antigens, the... more
The phylogeny of cyanobacteria is particularly interesting because of their ecological diversity and evolutionary importance Potts 2000, Shi and. The classification of cyanobacteria is traditionally based on morphological characters in... more
ABSTRACT. In the last few years two factors have helped to significantly advance our understanding of the Myxozoa. First, the phenomenal increase in fin fish aquaculture in the 1990s has lead to the increased importance of these... more
Balamuthia mandrillaris is a protist pathogen that can cause encephalitis with a fatality rate of >95%. This is due to our incomplete understanding of the pathogenesis and pathophysiology of B. mandrillaris encephalitis. B. mandrillaris... more
Trypanosoma theileri infection, latent in a mature Hereford cow, could not be demonstrated in routine blood smears or cultures. Throughout the 2-year period an intravenous injection of dexamethasonc consistently produced parasitaemia... more
SYNOPSIS. Extracts of Euglena gracilis carry out a very rapid but limited synthesis of phosphatidylcholine when S-adenosylmethionine or A T P and methionine are supplied. Cytidinediphosphocholine ap- CDP-choline, BSA and Tris buffer were... more
AS more than half of all living organisms are parasites , most infections in nature consist of multiple parasite strains or species . Interactions among coinfecting parasites can strongly influence parasite dynamics (both within and among... more
AS more than half of all living organisms are parasites , most infections in nature consist of multiple parasite strains or species . Interactions among coinfecting parasites can strongly influence parasite dynamics (both within and among... more
ABSTRACTAs Plasmodium sporozoites undergo gliding motility in vitro, they leave behind trails of circumsporozoite (CS) protein that correspond to their patterns of movement. This light microscopic observation was made using Plasmodium... more
ABSTRACTWhen Paramecium calkinsi encounter hyperosmotic stress, intracellular free alanine increases. In vivo assays indicate that the reaction catalyzed by alanine aminotransferase contributes to the build up of alanine in response to... more
The exponential development of maritime transport has made ballast water a primary vector for the spread of invasive organisms across the aquatic realm. This research aims to present a comprehensive overview of methodological and... more
This study characterizes microsporidian spores in the wasp Polistes sp. using light bright field microscopy and scanning electron microscopy (SEM). Initial observations with light microscopy revealed ovoid spores exhibiting brownian... more
The site specificity of the apicomplexans Gregarina cuneata and Gregarina steini. in larval Tenebrio molitor was investigated. Gregarina cuneata was found to inhabit the anteriormost region ofthe larval midgut, while G. steini was... more
Biological soil crusts are diverse assemblages of bacteria, cyanobacteria, algae, fungi, lichens, and mosses that cover much of arid land soils. The objective of this study was to quantify protozoa associated with biological soil crusts... more
Biological soil crusts are diverse assemblages of bacteria, cyanobacteria, algae, fungi, lichens, and mosses that cover much of arid land soils. The objective of this study was to quantify protozoa associated with biological soil crusts... more
Mitochondrial genome sequence of Vannella croatica (Amoebozoa, Discosea, Vannellida) was obtained using pulse-field gel electrophoretic isolation of the circular mitochondrial DNA, followed by the next-generation sequencing. The... more
The planktonic ciliates in the Romanian Black Sea waters have been little studied, although they have high ecological significance in the matter and energy flow of pelagic ecosystems. Among other common zooplankters, the protozoan Laboea... more
An important feature of ruminal ciliates is their phenotypic plasticity, which makes their identification difficult. The common manifestation of the phenotypic plasticity in rumen ciliates is a change in their cell size and caudal... more
This study aims to perform population analysis of the rumen ciliated protozoa of the free-living European bison (wisent, Bison bonasus, Linnaeus). The samples of the rumen fluid from the 18 bison subjected to the controlled culls within... more
Background Leishmaniasis, caused by parasites of the genus Leishmania, is a disease that effects up to 8 million people worldwide. Parasites are transmitted to human and animal hosts through the bite of an infected sand y. Novel... more
structure of the somatic cortex of the gymnostome ciliate Spafhidiuni spathula (0. F. M.).
Soil from a roadside ditch at Lake Waccamaw. North Carolina. was tested for cyst-forming free-living amoebae, and water from the same ditch was tested for fecal coliform bacteria. Soil saniples incubated at room temperature (21-23" C)... more
Cancer pagurus (Cancridae) from the Atlantic coast of France is parasitized by a new species of microsporida Ameson atlantieuin sp. nov. The main stages of the life eyele of the parasite are a monokaryotic and then diplokaryotic meront.... more
With the use of Weber's modified trichrome and Uvitex 2B techniques, spores of microsporidia were detected in the stools of four travelers presenting clinically with chronic diarrhea. The general health of these patients was not impaired,... more
Mtrrteilitl rrfringrns is recognized as one of the most significant pathogens of bivalve molluscs. The nucleotide sequence of the small subunit ribosomal RNA gene of Murteilia refringens is used to elucidate the phylogenetic position of... more
Ultrastruotural study of Thelohania maenadis PEREZ, miorosporidian parasite of the orabs Garoinu8 mediterraneUB CZERNIAVSKY and G. maenGS L. has been st udied again. The whole lifecyole of a speoies of the genus Thelohania HENNE GUY is... more
rigure 12: Oocysts of Cryptosporidium species staining red against a green background.......... 98 'igure 13: Oocysts of Cryptosporidium species staining red against a green background.
This revision of the classification of unicellular eukaryotes updates that of for the protozoa and expands it to include other protists. Whereas the previous revision was primarily to incorporate the results of ultrastructural studies,... more
Euglena gracilis is able to synthesize adenosine triphosphate under anaerobic conditions through a malonyl-independent fatty acid synthesis leading to wax ester fermentation. Mitochondrial fatty acid synthesis uses acetyl-CoA and... more
The present study analyzes the e€ects of zinc on Entamoeba histolytica activity and on its pathogenicity. Metal activity was evaluated in vitro with regard to the parasite's viability, replication, and adhesion to epithelial cells and... more
ABSTRACT. Using the polymerase chain reaction and arbitrarily selected oligonucleotide primers of 10 or 11 bases, we have amplified DNA sequences from Trypanosoma vivax parasites isolated from South America and Africa. On the basis of... more
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