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Cyclic peptides

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Cyclic peptides are a class of peptides characterized by a circular structure formed by covalent bonds between the terminal amino acids. This unique conformation enhances their stability, bioactivity, and specificity in biological interactions, making them significant in drug design and therapeutic applications.
lightbulbAbout this topic
Cyclic peptides are a class of peptides characterized by a circular structure formed by covalent bonds between the terminal amino acids. This unique conformation enhances their stability, bioactivity, and specificity in biological interactions, making them significant in drug design and therapeutic applications.

Key research themes

1. How can intracellular production methods enhance the generation and screening of cyclic peptide libraries?

This research area investigates the use of biological tools such as split inteins to enable the intracellular biosynthesis of cyclic peptides and proteins. It matters because cyclic peptides have superior stability and bioactivity, and generating libraries inside cells allows for the creation of vast, diverse cyclic peptide populations amenable to biological screening and selection, overcoming limitations of traditional chemical or extracellular methods.

Key finding: This paper demonstrates the use of the DnaE split intein from Synechocystis sp. PCC6803 to cyclize peptides and proteins intracellularly in Escherichia coli, producing cyclic dihydrofolate reductase and the cyclic eight-amino... Read more
Key finding: Using SUPR peptide mRNA display technology, this study evolved a cell-permeable macrocyclic peptide that inhibits autophagy by targeting protein-protein interactions. This represents an application of intracellular... Read more
Key finding: This work uses a noncanonical amino acid-containing cyclic peptide library to identify cyclic peptides that disrupt Lys48-linked ubiquitin chains in vitro and in cells, modulating proteasomal degradation. It advances... Read more

2. What chemical and structural strategies improve the pharmacokinetic properties and cell permeability of cyclic peptides for therapeutic use?

This theme explores how cyclization, incorporation of non-canonical amino acids, stereochemistry, and ligand design influence oral bioavailability, protease resistance, membrane permeability, and targeting efficiency of cyclic peptides. Such insights are essential for transforming cyclic peptides from biologically active molecules into drug candidates suitable for systemic administration and intracellular targeting.

Key finding: By evaluating 125 cyclic peptides ranging from 4 to 37 amino acids, this study identifies how cyclization folds peptides into bioactive conformations minimizing degradation and influencing exposure of polar atoms, thus... Read more
Key finding: This investigation finds that cyclization of arginine-rich peptides dramatically improves cellular uptake and endosomal escape efficiency, achieving up to 120% cytosolic delivery efficiency versus 2% for Tat peptide.... Read more
Key finding: This work designs cyclic peptides containing tryptophan and protonatable glutamic acid residues that respond to acidic environments by increased membrane partitioning and cargo delivery. The peptides translocate polar cargos... Read more
Key finding: This review synthesizes methodologies for peptide cyclization and highlights how cyclization enhances proteolytic resistance and membrane permeability, expanding cyclic peptides' applicability beyond extracellular targets. It... Read more

3. How do sequence composition and supramolecular design govern the molecular recognition and self-assembly properties of cyclic peptides?

This research theme examines the influence of amino acid composition, backbone constraints, and chemical modifications on cyclic peptide structural rigidity, binding affinity, and supramolecular self-assembly into functional architectures. Understanding these parameters is critical for designing cyclic peptides for applications in anion recognition, membrane channel formation, antimicrobial activity, and modulation of protein-protein interactions.

Key finding: The study shows that cyclic peptides leverage backbone rigidification and side chain functionalities to achieve highly selective and strong binding to anions, mimicking natural protein binding motifs. Preorganized hydrogen... Read more
Key finding: This work demonstrates that cyclic octapeptides with charged side chains (e.g., lysine derivatives) form large pores through self-assembly in lipid bilayers, whereas neutral side chains result in smaller unimeric pores.... Read more
Key finding: The paper identifies structural parameters—positive charge, amphipathicity, hydrophobicity, and α-helicity—that govern the antimicrobial potency and membrane interactions of cyclic peptides derived from defensins. The limited... Read more
Key finding: This review highlights the use of pseudoprolines as traceless turn-inducers incorporated into linear peptides to facilitate head-to-tail cyclization by promoting conformations favorable for cyclization and reducing side... Read more

All papers in Cyclic peptides

Multiple strains of Bacillus spp. were demonstrated to stimulate plant defence responses. However, very little is known about the nature of molecular determinants secreted by these Gram-positive bacteria that are responsible for the... more
This study highlights the use of low-cost agro-industrial raw material e date molasses for fermentative production of biosurfactants. Date palm (Phoenix dactylifera L.) is the primary crop in Oman, which shares 82% of all fruit crops... more
The cyanobacteria or "blue-green algae", as they are commonly termed, comprise a diverse group of oxygenic photosynthetic bacteria that inhabit a wide range of aquatic and terrestrial environments, and display incredible morphological... more
Despite significant advances in the management of immunosuppressed patients, invasive fungal infections remain an important life-threatening complication. In the last decade several new antifungal agents, including compounds in... more
Research in anthelmintic pharmacology faces a grim future. The parent field of veterinary parasitology has seemingly been devalued by governments, universities and the animal industry in general. Primarily due to the success of the... more
Aim: Test of Bacillus subtilis strain GA1 for its potential to control grey mould disease of apple caused by Botrytis cinerea. Methods and Results: GA1 was first tested for its ability to antagonize in vitro the growth of a wide variety... more
The investigation on microcystin topics is increasing due to the related ecological and public health risks. Recent investigation confirms a gap in establishing global patterns relating a particular environment to the bloom occurrence of... more
The genome of plant-associated Bacillus amyloliquefaciens FZB42 harbors an array of giant gene clusters involved in synthesis of lipopeptides and polyketides with antifungal, antibacterial and nematocidal activity. Five gene clusters,... more
The investigation on microcystin topics is increasing due to the related ecological and public health risks. Recent investigation confirms a gap in establishing global patterns relating a particular environment to the bloom occurrence of... more
It has been long experimentally demonstrated that human alpha-fetoprotein (HAFP) has an ability to bind immobilized estrogens with the most e±ciency for synthetic estrogen analog À À À diethylstilbestrol (DES). However, the question... more
The investigation on microcystin topics is increasing due to the related ecological and public health risks. Recent investigation confirms a gap in establishing global patterns relating a particular environment to the bloom occurrence of... more
The first total synthesis of FR-901375, a novel bicyclic depsipeptide isolated from the fermentation broth of Pseudomonas chloroaphis No. 2522, has been achieved. The synthetic approach involves 13 reaction steps and is achieved in 12%... more
The dynamics of cyclic peptide destruxins (dtxs) produced by Metarhizium anisopliae strains V245 and V275 were monitored both on solid and in liquid media. The results showed that both strains did not produce dtxs in large-scale fermenter... more
In this work, the potential of Bacillus subtilis strain M4 at protecting plants against fungal diseases was demonstrated in different pathosystems. We provide evidence for the role of secreted lipopeptides, and more particularly of... more
The effects of microcystins (MCs) from cyanobacterial cells on the enzymatic activities of acid and alkaline phosphatases (ACP and ALP) from liver, kidney and gill tissues, and the histopathological changes in freshwater Tilapia fish... more
The application of photoinduced electron transfer (PET) for the construction of heterocyclic ring systems is an appealing route in synthetic organic photochemistry. Electronically excited carbonyl chromophors in ketones, aldehydes,... more
Since RGD peptides (R: arginine; G: glycine; D: aspartic acid) have been found to promote cell adhesion in 1984 (Cell attachment activity of fibronectin can be duplicated by small synthetic fragments of the molecule, Nature 309 , numerous... more
Bikalga is a Hibiscus sabdariffa seed fermented condiment widely consumed in Burkina Faso and neighboring countries. The fermentation is dominated by Bacillus subtilis group species. Ten B. subtilis subsp. subtilis (six isolates) and... more
Automated and manual deprotection methods for allyl/allyloxycarbonyl (Allyl/Alloc) were evaluated for the preparation of side-chain-to-side-chain cyclic peptides. Using a standard Allyl/Alloc deprotection method, a small library of cyclic... more
Gene-encoded anti-microbial peptides (AMPs) are widespread in nature, as they are synthesized by microorganisms as well as by multicellular organisms from both the vegetal and the animal kingdoms. These naturally occurring AMPs form a... more
Background: Somatostatin analogues are used for the treatment of pancreatic fistula, with the aim of achieving fistula closure or reduction of output.
The user has requested enhancement of the downloaded file. All in-text references underlined in blue are added to the original document and are linked to publications on ResearchGate, letting you access and read them immediately. This... more
Cyclic RGD peptide anchored sterically stabilized liposomes (RGD-SL) were investigated for selective and preferential presentation of carrier contents at angiogenic endothetial cells overexpressing avP.i integrins on and around tumor... more
A panel of infectious disease specialists, clinical microbiologists and hospital epidemiologists of the five Swiss university hospitals reviewed the current literature on the treatment of invasive fungal infections in adults and... more
In the current study, the toxicological mechanisms of microcystin-LR and its disadvantageous effects on Daphnia magna were examined. Survival rate, number of newborn, activity of several important enzymes [glutathione S-transferase (GST),... more
A computational approach for the design of a molecularly imprinted polymer (MIP) specific for Cyanobacterial toxin microcystin-LR is presented. By using molecular modeling software, a virtual library of functional monomers was designed... more
Two unprecedented cyclic peptides, solomonamides A and B, were isolated from the marine sponge Theonella swinhoei. The structures were elucidated on the basis of comprehensive 1D and 2D NMR analysis and high-resolution mass spectrometry.... more
Melanocortins affect multiple physiological responses, including sexual behaviors. Bremelanotide is a synthetic peptide melanocortin analog of α-melanocyte-stimulating hormone that is an agonist at melanocortin receptors MC3R and MC4R.... more
The effects of microcystins from cyanobacterial cells on various oxidative stress biomarkers in liver, kidney and gill tissues in freshwater tilapia fish (Oreochromis sp.) were investigated under laboratory conditions. Microcystins are a... more
Microcystins are naturally occurring hepatotoxic cyclic heptapeptides produced by some toxic freshwater cyanobacterial species. In this study, crude extract of toxic cyanobacterial blooms from Dianchi Lake in southwestern China was used... more
Human sexual response involves a complex sequencing of interrelated mind/body processes. Few treatment options exist that address the complex multilayered etiological determinants of female sexual dysfunction (FSD). Review and evaluate... more
Investigation of the MeOH extract obtained from the root of the Ziziphus mauritiana grown in Thailand resulted in the isolation of two 14-and 13-membered cyclic alkaloids, mauritine L (1) and mauritine M (2), and three known cyclopeptide... more
The toxicity and metabolism of the cyanobacterial toxins microcystin-LR (MCLR), Dhb-microcystin-HtyR and nodularin were investigated in the cysts, nauplii and adults of the brine shrimp Artemia salina . The presence of the phase II... more
Kivela¨-Rajama¨ki M, Maisi P, Srinivas R, Tervahartiala T, Teronen O, Husa V, Salo T, Sorsa T. Levels and molecular forms of MMP-7 (matrilysin-1) and in diseased human peri-implant sulcular fluid.
Microsystin-LR is one of the most widespread and dangerous toxins produced by the freshwater Cyanobacteria. The contamination of water supplies with microcystin-LR has been reported in several areas around the world and the development of... more
We report an atomistic physical model for the passive membrane permeability of cyclic peptides. The computational modeling was performed in advance of the experiments and did not involve the use of "training data". The model explicitly... more
The present study describes for the first time the species composition and toxicity of benthic cyanobacteria forming mats on the Nile River and irrigation canal sediments in Egypt. A total of 19 species of cyanobacteria were isolated from... more
DNA gyrase is an attractive and well established target for the development of antibacterial agents. This bacterial enzyme, whose biological function is to control the topological state of DNA molecules, consists of two catalytic... more
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