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Cyclic nucleotides

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Cyclic nucleotides are intracellular signaling molecules characterized by a cyclic structure, formed from nucleotides. They play crucial roles in various biological processes by acting as secondary messengers, modulating cellular responses to hormones and neurotransmitters, and influencing pathways such as metabolism, gene expression, and cell proliferation.
lightbulbAbout this topic
Cyclic nucleotides are intracellular signaling molecules characterized by a cyclic structure, formed from nucleotides. They play crucial roles in various biological processes by acting as secondary messengers, modulating cellular responses to hormones and neurotransmitters, and influencing pathways such as metabolism, gene expression, and cell proliferation.

Key research themes

1. What are the biochemical roles and detection methods of canonical and non-canonical cyclic nucleotides as second messengers in cellular signaling?

This research area focuses on the characterization, biochemical pathways, and functional roles of both classical cyclic nucleotides—cAMP and cGMP—and emerging non-canonical cyclic nucleotides such as cCMP, cUMP, and others. The significance lies in understanding their synthesis, effector activation, degradation, and implications in physiological and pathological contexts, along with advanced methods for their detection and structural profiling.

Key finding: This comprehensive review establishes that canonical cAMP and cGMP fulfill all second messenger criteria, including synthesis by specific cyclases, targeted activation of effectors like protein kinases, and regulated... Read more
Key finding: Using extensive replica exchange molecular dynamics and NMR spectroscopy, this study elucidates the pre-organized conformational states of cyclic di-nucleotides (CDNs) in solution—with ribose adopting North puckers and... Read more
Key finding: This review identifies the chemical distinctions among cyclic nucleotides, especially highlighting the smaller pyrimidine rings (e.g., cCMP, cUMP) which have fewer hydrogen bonding interactions, potentially explaining their... Read more

2. How do prebiotic environmental conditions affect the stability and nonenzymatic oligomerization of cyclic nucleotides relevant to the origin of life?

This theme investigates the abiotic chemical pathways and environmental factors (e.g., temperature, solvent type, dry-wet cycling) that influence the formation, stability, and oligomerization of cyclic nucleotides. Such studies provide molecular insights into prebiotic chemistry scenarios leading to the emergence of RNA and DNA, focusing on the physicochemical parameters controlling nucleotide polymer formation and their potential to serve as primordial genetic materials.

Key finding: This experimental study demonstrates that 2′-3′ and 3′-5′ cyclic nucleotides (adenosine- and cytidine-based) undergo nonenzymatic oligomerization under repeated dehydration-rehydration cycles simulating terrestrial geothermal... Read more
Key finding: Using ab initio molecular dynamics simulations, this study finds that 2′,3′ cyclic nucleotides are thermodynamically more stable than their 3′,5′ counterparts in aqueous environments across a broad temperature range, while in... Read more
Key finding: This theoretical paper proposes the 'Circlet hypothesis' that double-stranded polynucleotide rings (circlets) with constrained conformational changes catalyzed prebiotic polymerization of nucleotides, explaining the origins... Read more

3. What molecular mechanisms underlie cyclic nucleotide-based regulation of protein kinases, and how can nucleotide selectivity and conformational changes be modulated for signal tuning?

This area explores the structure-function relationships of kinase regulatory subunits and ion channels that bind cyclic nucleotides, focusing on specificity determinants for cAMP versus cGMP, the resultant conformational dynamics, and the effects on downstream signaling pathways. It also encompasses the discovery of proteins harboring intertwined cyclase, phosphodiesterase, and kinase activities that finetune cyclic nucleotide homeostasis, underpinning cellular signal modulation.

Key finding: By mutational substitution of key residues in the cyclic nucleotide-binding domains of PKA regulatory subunit RIα, this study unambiguously demonstrates that switching critical amino acids from PKA-like to PKG-like sequences... Read more
Key finding: This work presents the development of a nearly rigid, cyclicly attached nitroxide spin label (R5c) that covalently links to two consecutive phosphorothioate positions along nucleic acid backbones regardless of nucleotide... Read more
Key finding: This study identifies the Arabidopsis thaliana KINγ subunit of SnRK2 kinases as a multi-functional protein harboring catalytically active adenylate cyclase (AC), guanylate cyclase (GC), and phosphodiesterase (PDE) domains.... Read more

All papers in Cyclic nucleotides

Carbon dioxide (CO 2 ) is produced by living organisms as a byproduct of metabolism. In physiological systems, CO 2 is unequivocally linked with bicarbonate (HCO 3 -) and pH via a ubiquitous family of carbonic anhydrases, and numerous... more
Anterior pituitary cells fire action potentials and release cyclic nucleotides both spontaneously and in response to agonist stimulation, but the relationship between electrical activity and cyclic nucleotide efflux has not been studied.... more
Several receptors linked to the adenylyl cyclase signaling pathway stimulate electrical activity and calcium influx in endocrine pituitary cells, and a role for an unidentified sodium-conducting channel in this process has been proposed.... more
The cellular localization of carnosine-like immunoreactivity was investigated in the adult rat forebrain and in glial cell cultures obtained from newborn rat brain. Using double staining methods, we showed that in vivo carnosine-like... more
Biomedical science is rapidly developing in terms of more transparency, openness and reproducibility of scientific publications. This is even more important for all studies that are based on results from basic semen examination. Recently... more
This study explores the protein interactions and evolutionary conservation of phosphodiesterase type 7A (PDE7A) across different species, to identify the species with the highest similarity to humans, which has important applications in... more
Background and Purpose: Asthenozoospermia is a leading cause of male infertility, but development of pharmacological agents to improve sperm motility is hindered by the lack of effective screening platforms and knowledge of suitable... more
Background and PurposeAsthenozoospermia is a leading cause of male infertility, but development of pharmacological agents to improve sperm motility is hindered by the lack of effective screening platforms and knowledge of suitable... more
Acute secretory diarrhea induced by infection with enterotoxigenic strains of Escherichia coli involves binding of stable toxin (STa) to its receptor on the intestinal brush border, guanylyl cyclase type C (GC-C). Intracellular cGMP is... more
HAL is a multi-disciplinary open access archive for the deposit and dissemination of scientific research documents, whether they are published or not. The documents may come from teaching and research institutions in France or abroad, or... more
The DedA protein family is a highly conserved and ancient family of membrane proteins with representatives in most sequenced genomes, including those of bacteria, archaea, and eukarya. The functions of the DedA family proteins remain... more
In a great variety of organisms throughout all kingdoms of life, the heme-based-sensor proteins are the key regulators of adaptive responses to fluctuating oxygen, carbon monoxide, and nitric oxide levels. These signal transducers achieve... more
Robust immune responses are essential for eliminating pathogens but must be metered to avoid prolonged immune activation and potential host damage. Upon recognition of microbial DNA, the cytosolic DNA sensor cyclic GMP-AMP (cGAMP)... more
Enhancing cyclic nucleotides signaling by inhibition of phosphodiesterases (PDEs) is known to be beneficial in disorders associated with cognitive decline. The present study was designed to investigate the effect of vinpocetine (PDE1... more
The AphA enzyme of Escherichia coli, a molecular class B periplasmic phosphatase that belongs to the DDDD superfamily of phosphohydrolases, was purified and subjected to biochemical characterization. Kinetic analysis with several... more
The cyclic-di-GMP (c-di-GMP) second messenger exemplifies a signaling system that regulates many bacterial behaviors of key importance; among them, c-di-GMP controls the transition between motile and sessile life-styles in bacteria.... more
Immunohistochemical techniques were utilized to localize the putative myelin enzyme 2' :3'-cyclic nucleotide 3'-phosphodiesterase (CNP) in the central nervous system (CNS) of normal (+/+ ) and Shiverer (Shi/Shi) mice (Mus musculus). CNP... more
The olfactory bulb (OB) presents a unique pattern of permanent acquisition of primary afferents and interneurons, but not much detail is known about the differentiation of its oligodendroglial cells. We studied the expression of... more
The differentiation of oligodendrocytes in the forebrain of the opossum (Didelphis marsupialis) has been studied by the immunohistochemical identification of 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNPase) and by the... more
Cyclic nucleotide phosphodiesterases (PDEs) are enzymes controlling cellular concentrations of the second messengers cAMP and cGMP. The crystal structure of the catalytic domain of PDE9A2, a member of a PDE family specifically hydrolyzing... more
Monoclonal antibodies against human and bovine 2':3'-cyclic nucleotide 3'-phosphodiesterase (CNPase) were generated by fusing FOX-NY myeloma cells with spleen cells from RBF/Dn mice previously immunized with the purified brain antigens.... more
Background: Berberis orthobotrys Bien ex Aitch. (Berberidaceae) is a plant indigenous of Pakistan that is locally used for the treatment of hypertension. Hypothesis: This study evaluated the vasoactive properties of a Berberis orthobotrys... more
The involvement of cyclic AMP-dependent protein kinase (PKA) and cyclic GMP-dependent protein kinase (PKG) in the eects of cyclic AMP-elevating agents on vascular smooth muscle relaxation, cyclic nucleotide dependent-protein kinase... more
Systemic lupus erythematosus is a polymorphic and multigenic inflammatory autoimmune disease. Cyclic AMP (cAMP) modulates inflammation and the inhibition of cyclic nucleotide phosphodiesterase type 4 (PDE4), which specifically hydrolyzes... more
Hearts from AC8TG mice develop a higher contractility (LVSP) and larger Ca 2؉ transients than NTG mice, with (surprisingly) no modification in L-type Ca 2؉ channel current (I Ca,L ) (1). In this study, we examined the cardiac response of... more
Left ventricular hypertrophy leads to heart failure and represents a high risk leading to premature death. Cyclic nucleotides (cAMP and cGMP) play a major role in heart contractility and cyclic nucleotide phosphodiesterases (PDEs) are... more
Systemic lupus erythematosus is a polymorphic and multigenic inflammatory autoimmune disease. Cyclic AMP (cAMP) modulates inflammation and the inhibition of cyclic nucleotide phosphodiesterase type 4 (PDE4), which specifically hydrolyzes... more
The involvement of cyclic AMP-dependent protein kinase (PKA) and cyclic GMP-dependent protein kinase (PKG) in the eects of cyclic AMP-elevating agents on vascular smooth muscle relaxation, cyclic nucleotide dependent-protein kinase... more
is a potent PDE5 inhibitor and thus a relaxant drug in corpus carvernosum smooth muscle. In the present work, we evidenced the presence of PDE5 isozyme and investigated the effect of sildenafil on the specific cyclic nucleotide... more
The effects of Gingko biloba extract EGb 761 on 5 isolated, vascular, cyclic nucleotide phosphodiesterase (PDE) isoforms were evaluated. EGb 761 preferentially inhibited PDE4 (IC 50 ϭ25.1 mg/L), the isoform that is mainly present in... more
Angiopoietin-like 4 (ANGPTL4), a secreted protein of the angiopoietin-like family, is induced by hypoxia in both tumor and endothelial cells. It is highly expressed in tumor cells from conventional renal carcinoma and in hypoxic... more
The patterns of expression of calmodulin-dependent cyclic nucleotide phosphodiesterase (CaM-PDE) have been studied in developing and adult rat brain using affinity-purified polyclonal antibodies against CaM-PDE. An immunocytochemical map... more
In a previous study, our laboratory reported that sildenafil citrate, a cyclic nucleotide phosphodiesterase type 5 inhibitor, reversed a learning impairment in rats induced by systemic inhibition of nitric oxide synthase (60 mg/kg, i.p.,... more
We examined whether treatment with sildenafil citrate (the active compound of Viagra), a cyclic nucleotide phosphodiesterase type 5 inhibitor (PDE5), would reverse the learning impairment induced by cholinergic muscarinic (mACh) receptor... more
Cyclic nucleotides are known to be effluxed from cultured cells or isolated tissues. Two recently described members of the multidrug resistance protein family, MRP4 and MRP5, might be involved in this process, because they transport the... more
Several ATP-binding cassette (ABC) transporters can transport drugs out of cells against steep concentration gradients resulting in resistance to the drugs transported. Recent work has shown that at least three members of the family of... more
Introduction: Heart failure (HF) is the leading cause of death worldwide. Most large and small animal disease models of HF are based on surgical procedures. A common surgical technique to induce HF is transverse aortic constriction (TAC),... more
Cyclic nucleotides are known to be effluxed from cultured cells or isolated tissues. Two recently described members of the multidrug resistance protein family, MRP4 and MRP5, might be involved in this process, because they transport the... more
Several ATP-binding cassette (ABC) transporters can transport drugs out of cells against steep concentration gradients resulting in resistance to the drugs transported. Recent work has shown that at least three members of the family of... more
The effects of hypothyroidism on oligodendroglial differentiation and myelination are for the first time studied by immunohistochemical localization of an early oligodendroglial marker, the 2%3%cyclic nucleotide 3%phosphodiesterase (E.C.... more
Myelination depends on the proper differentiation of oligodendrocytes and several factors may influence this event. For instance, thyroid hormone (T3) affects the timing of differentiation and regulates the expression of several enzymes... more
The steroid hormone, progesterone (P), modulates neuroendocrine functions in the central nervous system resulting in alterations in physiology and reproductive behavior in female mammals. A wide body of evidence indicates that these... more
In plants, Ca 2+ has emerged as the predominant second messenger for signal transduction, as cyclic nucleotides are not known to play any significant role in this system. Earlier, we characterized an interesting Ca2+-dependent protein... more
Non-restrictive, porous, external stents inhibit neointima formation in porcine vein grafts. Since the mechanisms underlying these effects are unknown we investigated the impact of this external stent on factors known to inhibit vascular... more
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