ISCB Africa ASBCB Conference on Bioinformatics
ISCB Africa ASBCB Conference on Bioinformatics | |
---|---|
Discipline | Bioinformatics Computational Biology |
Publication details | |
Publisher | International Society for Computational Biology African Society for Bioinformatics and Computational Biology |
History | 2007-present |
Website | www |
The ISCB Africa ASBCB Conference on Bioinformatics is a biennial academic conference on the subjects of bioinformatics and computational biology, organized by the African Society for Bioinformatics and Computational Biology (ASBCB) in conjunction with the International Society for Computational Biology (ISCB), of which the ASBCB is an African affilliate.
Origin
[edit]The conference was first held in 2007 as the "ASBCB Conference on the Bioinformatics of African Pathogens, Hosts and Vectors"[1].
List of conferences
[edit]Year | Location | Venue | Notes |
---|---|---|---|
2007 | Nairobi, Kenya[1] | International Livestock Research Institute | |
2009 | Bamako, Mali[2] | Azalai Hotel Salam | First conference with ISCB[3] |
2011 | Cape Town, South Africa[4] | Cape Town International Convention Centre | |
2013 | Casablanca, Morocco[5] | Novotel Casablanca City Center Hotel | |
2015 | Dar es Salaam, Tanzania[6] | White Sands Resort & Conference Centre | |
2017 | Entebbe, Uganda[7] | Uganda Virus Research Institute | |
2019 | Kumasi, Ghana[8] | Kwame Nkrumah University of Science and Technology[9] | |
2021 | Virtual Event[10][11] | Not applicable | Due to impact of Covid-19 pandemic |
2025 | Cape Town, South Africa[12] | Lagoon Beach Hotel, Conference Centre & Spa |
Current identity
[edit]Since 2009, the conference has been jointly organized with the International Society for Computational Biology (ISCB) and held in different locations within Africa.[13] Although having an evident African focus, the meeting is intended to be a truly international event, encompassing scientists and students from leading institutions in the US, Latin America, Europe and Africa. Holding this event in Africa, ISCB and ASBCB intend to promote local efforts for cooperation and dissemination of leading research techniques to combat major African diseases.
Conference goals
[edit]In combination with the ISCB, with its global perspective, one goal of the ISCB Africa ASBCB Conference is to expose and educate both junior and established scientists to the latest bioinformatics tools and techniques so that they can be used in researching treatments and cures, in the African context of the ASBCB, focusing on hosts, vectors and disease.
As a conference that involves participants from countries across Africa and elsewhere, a second, but definitely not lesser, goal of the ISCB Africa ASBCB Conference is to improve existing capacity for public health interventions in African countries by supporting collaboration and establishing networks for development and training. This builds upon the activities of the ASBCB outside of the conference, for example in supporting the H3ABioNet project[14] and its successor actions.
Format of the meeting
[edit]The meeting usually consists of a 3-day conference followed by practical workshops.
Keynote speakers
[edit]Senior speakers with affiliations or backgrounds in different African countries give keynote talks. At the 2025 ISCB Africa ASBCB Conference on Bioinformatics[15] the keynote speakers were Alan Christoffels[16], Alia Ben Khala[17], Anne von Gottburg[18] and Aida Ouangraoua[19].
Main conference
[edit]In addition to keynote talks, a lot of time at the conference is available for other speakers across the broad range of topics covered[15]. These range from introductions to computational techniques such as machine learning applicable to bioinformatics, to reports on progress on genomics and other omics analysis. Other talks focus on the public health problems that many African countries face with the control of tropical diseases. Virtual presentations can also be included from international bioinformatics organisations such as EMBL-EBI.
External impact
[edit]ISCB Africa ASBCB Conferences on Bioinformatics are useful not just in attracting media attention for the conferences themselves but for increasing understanding of the implications of bioinformatics in the wider world[20][21].
Student engagement
[edit]The ISCB has a Student Council[22] that organises symposia, workshops and networking sessions within conferences organised by the ISCB. A Student Symposium is organised at each ISCB Africa ASBCB Conference through the Regional Student Group structure of the ISCB Student Council[23]. This is an opportunity for students and other early-career researchers to present reports on their ongoing projects and to hear advice from other conference attendees[24].
Workshops and tutorials
[edit]Because bioinformatics depends so much on skills in using tools to analyse biological data (see bioinformatics databases and bioinformatics software tools for examples) the workshops and tutorials that are held in conjunction with each ISCB Africa ASBCB Conference on Bioinformatics may be the most important outcome of each one.
Immediately prior to the 2011 conference in Cape Town, participants gathered at the University of the Western Cape for a workshop on the bioinformatics tool eBioKit[25]. Immediately following the 2021 meeting the ASBCB collaborated with the National Institutes of Health Office of Data Science Strategy[26] in delivering an online Omics Codeathon[27].
Tutorials held at the 2025[15] ISCB Africa ASBCB Conference on Bioinformatics introduced the Afrigen-D (African Genomics Data Hub)[28], as well as the cobrapy
package for constraint-based modelling of metabolic networks at a genomic scale[29].
Poster sessions
[edit]In parallel with the rest of the programme there are poster sessions[30], allowing researchers to present their on-going activities in a concise form and to discuss it with other conference attendees.
Scientific publications
[edit]Since 2009, the ISCB Africa ASBCB Conference has been partnering with the Infection, Genetics and Evolution journal to publish papers presented at the conference[1]. More recently the Bioinformatics Gateway[31] of the F1000 online publishing platform[32] in collaboration with the ISCB has provided an additional means of publishing material from the conference[33].
References
[edit]- ^ a b c Gascuel, O; Benkahla, A; Hide, W; Masiga, D; Shah, T (2009). "Proceedings of the "Bioinformatics of African Diseases and Pathogen Vectors" Conference (Nairobi 2007) - Editorial". Infections, Genetics and Evolution. 9 (3): 305–307. doi:10.1016/j.meegid.2008.09.002. Retrieved 9 September 2025.
- ^ "Joint ISCB Africa ASBCB Conference 2009". ISCB Africa ASBCB Conference 2009. International Society for Computational Biology Inc. Retrieved 7 September 2025.
- ^ As well as being the first collaboration between the ASBCB and the ISCB, the 2009 ISCB Africa ASBCB Conference on Bioinformatics was organised in conjunction with the University of Bamako (Mali) and the King Abdullah University of Science and Technology (KAUST), Saudi Arabia.
- ^ "ISCB Africa ASBCB Joint Conference on Bioinformatics 2011". ISCB Africa ASBCB Conference. International Society for Computational Biology. Retrieved 7 September 2025.
- ^ "ISCB Africa ASBCB 2013 Conference on Bioinformatics". ISCB ASCB Africa. International Society for Computational Biology. Retrieved 8 September 2025.
- ^ "ISCB Africa ASBCB Conference on Bioinformatics". ISCB Africa ASCB 2015. African Society for Bioinformatics and Computational Biology. Retrieved 8 September 2025.
- ^ "ISCB newsletter Summer 2017" (PDF). Retrieved 19 July 2017.
- ^ "ISCB-Africa ASBCB 2019". HOME - ISCBAFRICA ASBCB 2019. International Society for Computational Biology. Retrieved 8 September 2025.
- ^ "ISCB-Africa ASBCB 2019; November 11-15, 2019; Kumasi, Ghana; Venue". Venue. International Society for Computational Biology. Retrieved 8 September 2025.
- ^ "ISCB Africa ASBCB 2021; June 7-10, 2021; Virtual Event". HOME - Africa/ASBCB 2021. International Society for Computational Biology. Retrieved 8 September 2025.
- ^ Refers to ASBCB Communities of Special Interest (COSIs) see https://www.asbcb.org/get-involved
- ^ "ISCB-Africa ASBCB Conference on Bioinformatics". HOME - Africa 2025. International Society for Computational Biology. Retrieved 7 September 2025.
- ^ "p56-57_ASBCB_Intl_Innovation_Issue_Research_Media.pdf" (PDF). Retrieved 30 August 2016.
- ^ "H3ABioNet - Pan African Bioinformatics Network for H3Africa". H3ABioNet - Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3Africa) consortium. H3ABioNet. Retrieved 29 September 2025.
- ^ a b c "Abridged Agenda". ISCB-Africa ASBCB Conference on Bioinformatics 2025. International Society for Computational Biology. Retrieved 29 September 2025.
- ^ "Research Laboratory of Alan Christoffels". SANBI. South African National Bioinformatics Institute. Retrieved 29 September 2025.
- ^ "Alia Benkahla - Google Scholar". Google Scholar. Google LLC. Retrieved 29 September 2025.
- ^ "Centre for Respiratory Diseases and Meningitis: Leadership: Anne von Gottburg". About - CRM. National Institute for Communicable Diseases. Retrieved 29 September 2025.
- ^ "CoBIUS Lab - Computational Biology: Team: Pre. Aïda Ouangraoua". Team: CoBIUS Lab - Computational Biology. Universite de Sherbrooke. Retrieved 29 September 2025.
- ^ Morris, Morgan (17 April 2025). "Bioinformatics Conference Aims to Bridge the Gap Between Research and Real-World Disease Response". University of the Western Cape. Retrieved 11 September 2025.
- ^ Ansarie, Munadia (6 June 2025). "African scientists launch the African Bioinformatics Institute". University of Cape Town News. Retrieved 11 September 2025.
- ^ "The ISCB Student Council". ISCB. International Society for Computational Biology. Retrieved 29 September 2025.
- ^ "ISCB Africa Student Coucil Symposium". Africa Student Council Symposium. International Society for Computational Biology. Retrieved 10 September 2025.
- ^ Rafael, CN; Ashano, E; Moosa, Y (2017). "Highlights of the second ISCB Student Council Symposium in Africa, 2017". F1000Research (ISCB Comm J). 6: 2183. doi:10.12688/f1000research.13463.1. PMID 29333232. Retrieved 30 September 2025.
- ^ de Villers, E; Kumuthini, J; Bongcam-Rudloff, E (2011). "ISCB Africa ASBCB Conference on Bioinformatics and eBioKit Workshop". EMBnet.journal. 17 (2): 7–9. doi:10.14806/ej.17.2.248. Retrieved 10 September 2025.
- ^ "About the Office of Data Science Strategy". NIH Office of Data Science Strategy. National Institutes of Health. Retrieved 10 September 2025.
- ^ "ASBCB Omics Codeathon – June 2021". ASBCB. African Society for Bioinformatics and Computational Biology. Retrieved 10 September 2025.
- ^ "The African Genomics Data Hub". Home: Afrigen-D. African Genomics Datahub. Retrieved 29 September 2025.
- ^ "COBRApy". opencobra/cobrapy. Github. Retrieved 29 September 2025.
- ^ Nyasimi, F; Masiga, D; Kibet, C (2019). "An expanded Motif Assessment and Ranking Suite for human and insect research [version 1; not peer reviewed] (poster)". F1000Research (ISCB Comm J). 8: 2075. doi:10.7490/f1000research.1117754.1. Retrieved 30 September 2025.
- ^ "Bioinformatics Research Gateway". F1000 Research Gateways. F1000 Research. Retrieved 30 September 2025.
- ^ "F1000 Research Open Access Publishing". F1000 Research. F1000Research. Retrieved 30 September 2025.
- ^ Shome, S; Parra, RG; Fatima, N (2019). "Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers [version 1; peer review: not peer reviewed]". F1000 Research (ISCB Comm J). 8: 1574. doi:10.12688/f1000research.20408.1. PMID 31508204. Retrieved 30 September 2025.