Pattern and process in Amazon tree turnover, 1976-2001

Biotropica, 2005

Ecology, 2005

Lianas (woody vines) are an important component of lowland tropical forests. We report large liana and tree inventory and dynamics data from Amazonia over periods of up to 24 years, making this the longest geographically extensive study of liana ecology to date. We use these results to address basic questions about the ecology of large lianas in mature forests and their interactions with trees. In one intensively studied site we find that large lianas (Ն10 cm diameter) represent Ͻ5% of liana stems, but 80% of biomass of well-lit upper canopy lianas. Across sites, large lianas and large trees are both most successful in terms of structural importance in richer soil forests, but large liana success may be controlled more by the availability of large tree supports rather than directly by soil conditions. Long-term annual turnover rates of large lianas are 5-8%, three times those of trees. Lianas are implicated in large tree mortality: liana-infested large trees are three times more likely to die than liana-free large trees, and large lianas are involved in the death of at least 30% of tree basal area. Thus large lianas are a much more dynamic component of Amazon forests than are canopy trees, and they play a much more significant functional role than their structural contribution suggests.

Journal of Ecology, 2008

1Tree mortality is an important process in forest ecology. We explored the extent to which tropical tree death is a predictable outcome of taxon and individual level properties by means of mixed-species logistic regression, for trees ≥ 10 cm in diameter. We worked in two lowland forest regions with markedly different floristic composition and dynamic regimes – the high wood density, low-mortality northeastern (NE) Amazon (in eastern Venezuela), and the low wood density, high-mortality northwestern (NW) Amazon (in northern Peru).2Among those genera that are shared between regions there were no detectable regional differences in mortality rates. This suggests that floristic compositional differences are a major driver of the twofold regional contrast in stand-level mortality.3In NE forests, mortality risk of individual trees is best predicted by low taxon-level wood density, slow relative growth, and large size, reflecting phylogenetically determined life-history strategy, physiological stress and senescence.4In NW forests, trees with low wood density and slow relative growth are also at most risk, but probability of death is independent of tree size, indicating that senescence is unimportant in this region.5Synthesis. This study shows that despite fundamental floristic and dynamic differences between the two Amazonian regions, mortality risk can be predicted with mixed-species, individual-based statistical models and that the predictors are remarkably similar, such that tree growth and wood density both play important roles.Tree mortality is an important process in forest ecology. We explored the extent to which tropical tree death is a predictable outcome of taxon and individual level properties by means of mixed-species logistic regression, for trees ≥ 10 cm in diameter. We worked in two lowland forest regions with markedly different floristic composition and dynamic regimes – the high wood density, low-mortality northeastern (NE) Amazon (in eastern Venezuela), and the low wood density, high-mortality northwestern (NW) Amazon (in northern Peru).Among those genera that are shared between regions there were no detectable regional differences in mortality rates. This suggests that floristic compositional differences are a major driver of the twofold regional contrast in stand-level mortality.In NE forests, mortality risk of individual trees is best predicted by low taxon-level wood density, slow relative growth, and large size, reflecting phylogenetically determined life-history strategy, physiological stress and senescence.In NW forests, trees with low wood density and slow relative growth are also at most risk, but probability of death is independent of tree size, indicating that senescence is unimportant in this region.Synthesis. This study shows that despite fundamental floristic and dynamic differences between the two Amazonian regions, mortality risk can be predicted with mixed-species, individual-based statistical models and that the predictors are remarkably similar, such that tree growth and wood density both play important roles.

Ecology Letters, 2014

The Amazon rain forest sustains the world's highest tree diversity, but it remains unclear why some clades of trees are hyperdiverse, whereas others are not. Using dated phylogenies, estimates of current species richness and trait and demographic data from a large network of forest plots, we show that fast demographic traitsshort turnover timesare associated with high diversification rates across 51 clades of canopy trees. This relationship is robust to assuming that diversification rates are either constant or decline over time, and occurs in a wide range of Neotropical tree lineages. This finding reveals the crucial role of intrinsic, ecological variation among clades for understanding the origin of the remarkable diversity of Amazonian trees and forests.

Global Change Biology, 2008

Changes in the abundance and distribution of individual species have been widely documented in Britain and other countries in recent decades, but little has been done to determine changes in community composition over broad geographic areas. Here, we studied species turnover in 51 butterfly assemblages in Britain since 1976, examining extinction and colonisation events together with variation in the abundances of the species. We showed that the species turnover that occurred over 20 years in Britain was associated with colonisation and extinction events and also with variability in the abundance of the species. These changes in community composition differed according to the habitat requirements of the species and their previous distributions, being more evident for habitat specialists and for southerly distributed species. Colonising species often became abundant components of the communities they joined, although this was more evident for generalist than for specialist species. The abundance of species following their arrival, increased with time since colonisation. Species turnover associated with southerly species expanding northwards is consistent with being a response to climate change. The results suggest that climate- and habitat-driven changes in the identity and abundance of species within communities are widespread, and probably ubiquitous. Similar changes are likely to be occurring in other groups of organisms that are similarly undertaking major range shifts associated with climate change.

Plant Ecology & Diversity, 2014

New Phytologist, 2010

The rich ecology of tropical forests is intimately tied to their moisture status. Multi-site syntheses can provide a macro-scale view of these linkages and their susceptibility to changing climates. Here, we report pan-tropical and regional-scale analyses of tree vulnerability to drought.

Philosophical Transactions of the Royal Society B: Biological Sciences, 2013

PLoS ONE, 2012

Lianas are a key component of tropical forests; however, most surveys are too small to accurately quantify liana community composition, diversity, abundance, and spatial distribution -critical components for measuring the contribution of lianas to forest processes. In 2007, we tagged, mapped, measured the diameter, and identified all lianas $1 cm rooted in a 50-ha plot on Barro Colorado Island, Panama (BCI). We calculated liana density, basal area, and species richness for both independently rooted lianas and all rooted liana stems (genets plus clones). We compared spatial aggregation patterns of liana and tree species, and among liana species that varied in the amount of clonal reproduction. We also tested whether liana and tree densities have increased on BCI compared to surveys conducted 30-years earlier. This study represents the most comprehensive spatially contiguous sampling of lianas ever conducted and, over the 50 ha area, we found 67,447 rooted liana stems comprising 162 species. Rooted lianas composed nearly 25% of the woody stems (trees and lianas), 35% of woody species richness, and 3% of woody basal area. Lianas were spatially aggregated within the 50-ha plot and the liana species with the highest proportion of clonal stems more spatially aggregated than the least clonal species, possibly indicating clonal stem recruitment following canopy disturbance. Over the past 30 years, liana density increased by 75% for stems $1 cm diameter and nearly 140% for stems $5 cm diameter, while tree density on BCI decreased 11.5%; a finding consistent with other neotropical forests. Our data confirm that lianas contribute substantially to tropical forest stem density and diversity, they have highly clumped distributions that appear to be driven by clonal stem recruitment into treefall gaps, and they are increasing relative to trees, thus indicating that lianas will play a greater role in the future dynamics of BCI and other neotropical forests.

Biotropica, 2010

We monitored seventy-two 1 ha permanent plots spread over 64 km 2 of terra firme forest at Reserva Ducke (Manaus, Amazonas, Brazil) over 2-yr intervals to assess the effects of a soil and topographic gradient on the rate of change in the aboveground tree live biomass (AGLB). AGLB increased significantly over the 2-yr intervals, exhibiting a mean rate of change of 1.65 Mg/ha/yr (bootstrapped 95% CI: 1.15, 2.79). The rate of change varied according to tree size class; understory and sub-canopy trees exhibited higher rates of change. Over the whole period, the rate of change was not related to soil or topographic features of the plots, but there was evidence that the relationships varied depending on the year of measurement. In the plots monitored between 2001 and 2003 we found a significant relationship between AGLB change and the soil textural gradient, but this relationship was not evident in plots monitored between 2002 and 2004. This suggests that both the temporal variation in the soil-biomass change relationship and the size structure of the forest need to be included in models of biomass change in Amazonia. We also noted that the rate of biomass change is sensitive to the equation used to estimate AGLB. Allometric models that incorporate wood-density data provide higher per plot AGLB estimates, but lower rates of change, suggesting that variations in floristic composition have important implications for carbon cycling in diverse tropical forests.

Global Change Biology, 2006

The biomass of tropical forests plays an important role in the global carbon cycle, both as a dynamic reservoir of carbon, and as a source of carbon dioxide to the atmosphere in areas undergoing deforestation. However, the absolute magnitude and environmental determinants of tropical forest biomass are still poorly understood. Here, we present a new synthesis and interpolation of the basal area and aboveground live biomass of old-growth lowland tropical forests across South America, based on data from 227 forest plots, many previously unpublished. Forest biomass was analyzed in terms of two uncorrelated factors: basal area and mean wood density. Basal area is strongly affected by local landscape factors, but is relatively invariant at regional scale in moist tropical forests, and declines significantly at the dry periphery of the forest zone. Mean wood density is inversely correlated with forest dynamics, being lower in the dynamic forests of western Amazonia and high in the slow-growing forests of eastern Amazonia. The combination of these two factors results in biomass being highest in the moderately seasonal, slow growing forests of central Amazonia and the Guyanas (up to 350 Mg dry weight ha À1 ) and declining to 200-250 Mg dry weight ha À1 at the western, southern and eastern margins. Overall, we estimate the total aboveground live biomass of intact Amazonian rainforests (area 5.76 Â 10 6 km 2 in 2000) to be 93 AE 23 Pg C, taking into account lianas and small trees. Including dead biomass and belowground biomass would increase this value by approximately 10% and 21%, respectively, but the spatial variation of these additional terms still needs to be quantified.

PLOS ONE, 2015

General patterns of forest dynamics and productivity in the Andes Mountains are poorly characterized. Here we present the first large-scale study of Andean forest dynamics using a set of 63 permanent forest plots assembled over the past two decades. In the North-Central Andes tree turnover (mortality and recruitment) and tree growth declined with increasing elevation and decreasing temperature. In addition, basal area increased in Lower Montane Moist Forests but did not change in Higher Montane Humid Forests. However, at higher elevations the lack of net basal area change and excess of mortality over recruitment suggests negative environmental impacts. In North-Western Argentina, forest dynamics appear to be influenced by land use history in addition to environmental variation. Taken together, our results indicate that combinations of abiotic and biotic factors that vary across elevation gradients are important determinants of tree turnover and productivity in the Andes. More extensive and longer-term monitoring and analyses of forest dynamics in permanent plots will be necessary to understand how demographic processes and woody biomass are responding to changing environmental conditions along elevation gradients through this century.

Biotropica, 2009

In this study, we investigated the pattern of floristic similarity as a function of geographical distances and environmental variability in well-drained uplands (terra firme) in Colombian Amazonia. The study site comprised three National Natural Parks, Tinigua, Chiribiquete, and Amacayacu, located in different geological units that represent a soil fertility gradient linked to parental materials. Differences in species richness between sites were compared using rarefaction analysis. A clear floristic transition appeared in the east-west direction following a soil fertility gradient along the first PCoA axis. In multiple regression analyses based on distance matrices, both geographical distances and geology explained 64 percent of the total floristic variation. Geographical distances alone accounted for 12 percent of variation in floristic similarities among plots, while geology alone accounted for 1 percent, and the joint effect of both explained 51 percent of the floristic variation. The species richness trend supports the existence of a latitudinal corridor southward of the geographical Equator in the Amazon basin, where tree diversity reaches the maximum expected values. A coupled effect of stochastic dispersal limitation and habitat specialization would certainly appear to be an appropriate explanation for tree species turnover in terra firme forests in Colombian Amazonia, strongly emphasizing that competition and neutrality must be supplementary rather than mutually exclusive processes. This result pinpoints the effect of dispersal on floral mixing as an ongoing active process for structuring tree communities in NW Amazonia, and the size of the reserves as a relevant issue to protect rare species from extinction by chance.

PLoS ONE, 2011

An understanding of the drivers of tree growth at the species level is required to predict likely changes of carbon stocks and biodiversity when environmental conditions change. Especially in species-rich tropical forests, it is largely unknown how species differ in their response of growth to resource availability and individual size. We use a hierarchical Bayesian approach to quantify the impact of light availability and tree diameter on growth of 274 woody species in a 50-ha long-term forest census plot in Barro Colorado Island, Panama. Light reaching each individual tree was estimated from yearly vertical censuses of canopy density. The hierarchical Bayesian approach allowed accounting for different sources of error, such as negative growth observations, and including rare species correctly weighted by their abundance. All species grew faster at higher light. Exponents of a power function relating growth to light were mostly between 0 and 1. This indicates that nearly all species exhibit a decelerating increase of growth with light. In contrast, estimated growth rates at standardized conditions (5 cm dbh, 5% light) varied over a 9-fold range and reflect strong growth-strategy differentiation between the species. As a consequence, growth rankings of the species at low (2%) and high light (20%) were highly correlated. Rare species tended to grow faster and showed a greater sensitivity to light than abundant species. Overall, tree size was less important for growth than light and about half the species were predicted to grow faster in diameter when bigger or smaller, respectively. Together light availability and tree diameter only explained on average 12% of the variation in growth rates. Thus, other factors such as soil characteristics, herbivory, or pathogens may contribute considerably to shaping tree growth in the tropics.

Ecology Letters, 2006

The theory of metabolic ecology predicts specific relationships among tree stem diameter, biomass, height, growth and mortality. As demographic rates are important to estimates of carbon fluxes in forests, this theory might offer important insights into the global carbon budget, and deserves careful assessment. We assembled data from 10 oldgrowth tropical forests encompassing censuses of 367 ha and > 1.7 million trees to test the theory's predictions. We also developed a set of alternative predictions that retained some assumptions of metabolic ecology while also considering how availability of a key limiting resource, light, changes with tree size. Our results show that there are no universal scaling relationships of growth or mortality with size among trees in tropical forests. Observed patterns were consistent with our alternative model in the one site where we had the data necessary to evaluate it, and were inconsistent with the predictions of metabolic ecology in all forests.

Plant Ecology & Diversity, 2014

The zone of transition (ZOT) between the Cerrado and the Amazon forest in southern Amazonia represents a unique and rapidly shrinking area due to land-use change. Aims: To compare the dynamics and above-ground biomass of vegetation located in the ZOT with core Amazon forest and to determine how ZOT dynamics differ within vegetation types for different tree diameter classes. Methods: Censuses of trees were conducted in seven plots in monodominant forest, semi-deciduous seasonal forest, gallery forest, cerrado sensu stricto and cerradão, in north-eastern Mato Grosso, Brazil from 1996 to 2010, including data for the 2005 drought year. Separate analyses of stem dynamics and biomass were carried out for two different diameter (d) classes: 5 ≤ d < 10 cm and d ≥ 10 cm. Results: For trees with d ≥ 10 cm the average mortality rate was 2.8% year −1 , with an estimated above-ground dry biomass of 210 Mg ha −1 . Trees with 5 ≤ d < 10 cm constituted only a small fraction of the total biomass store (ca. 10 Mg ha −1 ) and had a mortality rate of 7.4% year −1 and recruitment of 6.5% year −1 . Overall, mortality and recruitment in the ZOT were greater than in core Amazonian forests (1-2% year −1 ).

Climatic Change, 2014

As land use change (LUC), including deforestation, is a patchy process, estimating the impact of LUC on carbon emissions requires spatially accurate underlying data on biomass distribution and change. The methods currently adopted to estimate the spatial variation of above-and below-ground biomass in tropical forests, in particular the Brazilian Amazon, are usually based on remote sensing analyses coupled with field datasets, which tend to be relatively scarce and often limited in their spatial distribution. There are notable differences among the resulting biomass maps found in the literature. These differences subsequently result in relatively high uncertainties in the carbon emissions calculated from land use change, and have a larger impact when biomass maps are coded into biomass classes referring to specific ranges of biomass values. In this paper we analyze the differences among recentlypublished biomass maps of the Amazon region, including the official information used by the Brazilian government for its communication to the United Nation Framework on Climate Change Convention of the United Nations. The estimated average pre-deforestation biomass in Climatic Change the four maps, for the areas of the Amazon region that had been deforested during the 1990-2009 period, varied from 205±32 Mg ha −1 during 1990-1999, to 216±31 Mg ha −1 during 2000-2009. The biomass values of the deforested areas in 2011 were between 7 and 24 % higher than for the average deforested areas during 1990-1999, suggesting that although there was variation in the mean value, deforestation was tending to occur in increasingly carbondense areas, with consequences for carbon emissions. To summarize, our key findings were: (i) the current maps of Amazonian biomass show substantial variation in both total biomass and its spatial distribution; (ii) carbon emissions estimates from deforestation are highly dependent on the spatial distribution of biomass as determined by any single biomass map, and on the deforestation process itself; (iii) future deforestation in the Brazilian Amazon is likely to affect forests with higher biomass than those deforested in the past, resulting in smaller reductions in carbon dioxide emissions than expected purely from the recent reductions in deforestation rates; and (iv) the current official estimate of carbon emissions from Amazonian deforestation is probably overestimated, because the recent loss of higher-biomass forests has not been taken into account.

Journal of Ecology, 2004

1 Mathematical proofs show that rate estimates, for example of mortality and recruitment, will decrease with increasing census interval when obtained from censuses of non-homogeneous populations. This census interval effect could be confounding or perhaps even driving conclusions from comparative studies involving such rate estimates. 2 We quantify this artefact for tropical forest trees, develop correction methods and re-assess some previously published conclusions about forest dynamics. 3 Mortality rates of > 50 species at each of seven sites in Africa, Latin America, Asia and Australia were used as subpopulations to simulate stand-level mortality rates in a heterogeneous population when census intervals varied: all sites showed decreasing stand mortality rates with increasing census interval length. 4 Stand-level mortality rates from 14 multicensus long-term forest plots from Africa, Latin America, Asia and Australia also showed that, on average, mortality rates decreased with increasing census interval length. 5 Mortality, recruitment or turnover rates with differing census interval lengths can be compared using the mean rate of decline from the 14 long-term plots to standardize estimates to a common census length using X^• • = '^ ^ ^°°^ where X is the rate and t is time between censuses in years. This simple general correction should reduce the bias associated with census interval variation, where it is unavoidable. 6 Re-analysis of published results shows that the pan-tropical increase in stem turnover rates over the late 20th century cannot be attributed to combining ). s. L. Lewis et al. lower turnover rates than New World sites, as previously reported. Our pan-tropical best estimate adjusted stem turnover rate is 1.81 + 0.16% a"' (mean + 95% CI, n = 65). 7 As differing census intervals affect comparisons of mortality, recruitment and turnover rates, and can lead to erroneous conclusions, standardized field methods, the calculation of local correction factors at sites where adequate data are available, or the use of our general standardizing formula to take account of sample intervals, are to be recommended.

Journal of Biogeography, 2011

Amazonia contains the largest remaining tracts of undisturbed tropical forest on earth, and is thus critical to international nature conservation and carbon sequestration efforts. Amazonian forests are notoriously difficult to study, however, due to their species richness and inaccessibility. This has limited efforts to produce the accurate, high-resolution biodiversity maps needed for conservation and development. The aims of the research described here were to identify efficient solutions to the problems of tropical forest inventory; to use these methods to identify floristic patterns and their causes in western Amazonia; and propose new means to map floristic patterns in these forests.

Global Ecology and Biogeography, 2012

Aim To test the extent to which the vertical structure of tropical forests is determined by environment, forest structure or biogeographical history.

Philosophical Transactions of the Royal Society B: Biological Sciences, 2013

Biodiversity and Conservation, 2011

The Ngovayang Massif of southern Cameroon is a range of small hills near the Atlantic coast, in the Lower Guinea floristic region. This region is known to harbor forests with high levels of biodiversity and endemism, but this Massif is botanically poorly known. We assessed tree species diversity, floristic composition and level of endemism of the Ngovayang forest, comparing it with other sites in Central Africa. Five 1-ha permanent plots within old-growth lowland forests of the Ngovayang Massif were censused. A total of 2,658 individuals with dbh C 10 cm were recorded, belonging to 293 species, 170 genera and 60 families. The mean number of stems was 532 ± 75 stems ha -1 . Taking into account other data available, the list of vascular plants known in the Massif reaches a total of 450 species. We found 47 species of high conservation value, including Cameroon endemics and other rare and threatened species. Species richness and endemism are comparable to those of the richest known sites in Central African forests. The forests of Electronic supplementary material The online version of this article (Ngovayang were found to be particularly rich in Fabaceae-Caesalpinioideae. Topographic heterogeneity, high precipitation and atmospheric humidity owing to the proximity of the ocean, and permanence of a forest cover during past geological times probably all contribute to explaining the Massif's high tree diversity and endemism. This study highlights the botanical importance of the poorly studied Ngovayang forest within the Lower Guinea region, justifying efforts for improved assessment of this value and for the development of suitable national conservation strategies.

2011

... Claudia Bouroncle Development Practice Programme, Tropical Agricultural Centre for Research and Higher Education (CATIE), 7170 Cartago, Turrialba 30501, Costa Rica ... (palms) (Hartshorn &amp; Hammel 1994, Laska 1997, Rincón et al. 1999). ...

Biological Reviews, 2012

Tropical forests play a major role in regulating global carbon (C) fluxes and stocks, and even small changes to C cycling in this productive biome could dramatically affect atmospheric carbon dioxide (CO 2 ) concentrations. Temperature is expected to increase over all land surfaces in the future, yet we have a surprisingly poor understanding of how tropical forests will respond to this significant climatic change. Here we present a contemporary synthesis of the existing data and what they suggest about how tropical forests will respond to increasing temperatures. Our goals were to: (i) determine whether there is enough evidence to support the conclusion that increased temperature will affect tropical forest C balance; (ii) if there is sufficient evidence, determine what direction this effect will take; and, (iii) establish what steps should to be taken to resolve the uncertainties surrounding tropical forest responses to increasing temperatures. We approach these questions from a mass-balance perspective and therefore focus primarily on the effects of temperature on inputs and outputs of C, spanning microbial-to ecosystem-scale responses. We found that, while there is the strong potential for temperature to affect processes related to C cycling and storage in tropical forests, a notable lack of data combined with the physical, biological and chemical diversity of the forests themselves make it difficult to resolve this issue with certainty. We suggest a variety of experimental approaches that could help elucidate how tropical forests will respond to warming, including large-scale in situ manipulation experiments, longer term field experiments, the incorporation of a range of scales in the investigation of warming effects (both spatial and temporal), as well as the inclusion of a diversity of tropical forest sites. Finally, we highlight areas of tropical forest research where notably few data are available, including temperature effects on: nutrient cycling, heterotrophic versus autotrophic respiration, thermal acclimation versus substrate limitation of plant and microbial communities, below-ground C allocation, species composition (plant and microbial), and the hydraulic architecture of roots. Whether or not tropical forests will become a source or a sink of C in a warmer world remains highly uncertain. Given the importance of these ecosystems to the global C budget, resolving this uncertainty is a primary research priority.

New Phytologist, 2012

Revista Árvore, 2008

RESUMO -Com o objetivo de verificar a existência de mudanças estruturais e a influência de diferentes classes de solos sobre as taxas de dinâmica da comunidade arbórea, um fragmento de Floresta Estacional Semidecidual Montana (8,7 ha) em Lavras, MG, foi estudado em um período de cinco anos (2000)(2001)(2002)(2003)(2004)(2005). Os dados foram coletados em 47 parcelas de 20 × 20 m, dispostas em duas transeções, distantes 80 m entre si, cruzando o fragmento no sentido de maior comprimento. No ano de 2000, foram amostrados todos os indivíduos arbóreos com DAP > 5 cm. As informações coletadas para cada indivíduo foram: identificação botânica da espécie e DAP. Em 2005, foram registrados os indivíduos mortos, remensurados os sobreviventes e mensurados e identificados os indivíduos recrutados (DAP > 5 cm). Foram calculadas as taxas de dinâmica: mortalidade, recrutamento, ganho e perda em área basal de cada parcela, para a área total e para cada classe de solo (Nitossolos, Latossolos e Cambissolos). O padrão observado no fragmento foi de redução no número de indivíduos e estabilidade da área basal. Entretanto, não foram identificadas diferenças entre as classes de solos, em relação às taxas de dinâmica. As populações das espécies classificadas como de subdossel aumentaram a dominância ecológica na área. Os resultados permitiram concluir que o fragmento estudado está em uma fase avançada de sucessão pósdistúrbio e as variações espaciais das taxas de dinâmica não apresentaram relações com as classes de solos identificadas na área.

Global Change Biology, 2015

The important role of tropical forests in the global carbon cycle makes it imperative to assess changes in their carbon dynamics for accurate projections of future climate-vegetation feedbacks. Forest monitoring studies conducted over the past decades have found evidence for both increasing and decreasing growth rates of tropical forest trees. The limited duration of these studies restrained analyses to decadal scales, and it is still unclear whether growth changes occurred over longer time scales, as would be expected if CO 2 -fertilization stimulated tree growth. Furthermore, studies have so far dealt with changes in biomass gain at forest-stand level, but insights into species-specific growth changesthat ultimately determine community-level responsesare lacking. Here, we analyse species-specific growth changes on a centennial scale, using growth data from tree-ring analysis for 13 tree species (~1300 trees), from three sites distributed across the tropics. We used an established (regional curve standardization) and a new (sizeclass isolation) growth-trend detection method and explicitly assessed the influence of biases on the trend detection. In addition, we assessed whether aggregated trends were present within and across study sites. We found evidence for decreasing growth rates over time for 8-10 species, whereas increases were noted for two species and one showed no trend. Additionally, we found evidence for weak aggregated growth decreases at the site in Thailand and when analysing all sites simultaneously. The observed growth reductions suggest deteriorating growth conditions, perhaps due to warming. However, other causes cannot be excluded, such as recovery from large-scale disturbances or changing forest dynamics. Our findings contrast growth patterns that would be expected if elevated CO 2 would stimulate tree growth. These results suggest that commonly assumed growth increases of tropical forests may not occur, which could lead to erroneous predictions of carbon dynamics of tropical forest under climate change.

Ecological Applications, 2010

Atmospheric nitrogen (N) deposition is a recognized threat to plant diversity in temperate and northern parts of Europe and North America. This paper assesses evidence from field experiments for N deposition effects and thresholds for terrestrial plant diversity protection across a latitudinal range of main categories of ecosystems, from arctic and boreal systems to tropical forests. Current thinking on the mechanisms of N deposition effects on plant diversity, the global distribution of G200 ecoregions, and current and future (2030) estimates of atmospheric N-deposition rates are then used to identify the risks to plant diversity in all major ecosystem types now and in the future.

Ecology, 2009

We compared forest canopy heights and nitrogen concentrations in long-term research sites and in 2 3 2 km landscapes surrounding these sites along a substrate age gradient in the Hawaiian Islands. Both remote airborne and ground-based measurements were used to characterize processes that control landscape-level variation in canopy properties. We integrated a waveform light detection and ranging (LiDAR) system, a high-resolution imaging spectrometer, and a global positioning system/inertial measurement unit to provide highly resolved images of ground topography, canopy heights, and canopy nitrogen concentrations (1) within a circle 50 m in radius focused on a long-term study site in the center of each landscape; (2) for the entire 2 3 2 km landscape regardless of land cover; and (3) after stratification, for our target cover class, native-dominated vegetation on constructional geomorphic surfaces throughout each landscape. Remote measurements at all scales yielded the same overall patterns as did ground-based measurements in the long-term sites. The two younger landscapes supported taller trees than did older landscapes, while the two intermediate-aged landscapes had higher canopy nitrogen (N) concentrations than did either young or old landscapes. However, aircraft-based analyses detected substantial variability in canopy characteristics on the landscape level, even within the target cover class. Canopy heights were more heterogeneous on the older landscapes, with coefficients of variation increasing from 23-41% to 69-78% with increasing substrate age. This increasing heterogeneity was associated with a larger patch size of canopy turnover and with dominance of most secondary successional stands by the mat-forming fern Dicranopteris linearis in the older landscapes.

Plant Ecology & Diversity, 2014

The forests of north-west Amazonia are characterised by the highest levels of tree diversity in the world, high rainfall and relatively fertile soils. Aims: Here we present a comprehensive description of the carbon cycle of two 1 ha forests plots in Allpahuayo, near Iquitos, Peru, one on an occasionally inundated alisol/gleysol landscape, the other on an arenosol (sandy soil). Methods: Data on the components of net primary productivity (NPP) and autotrophic respiration were collected over the period 2009-2011, and summed to estimate gross primary productivity (GPP) and carbon use efficiency (CUE). Results: Overall, these forests showed high values of GPP (39.05 ± 4.59 and 41.88 ± 4.60 Mg C ha −1 year −1 ). Despite the lack of a dry season, the forests showed distinct seasonality in tree growth, litterfall, flowering and fine root productivity. This showed that tropical forests with little seasonality in water supply can still exhibit distinct seasonality in NPP and carbon use, apparently synchronised to the solar radiation cycle. We found remarkably little difference in productivity between the alisol/gleysol plot and the arenosol plot. Conclusions: The GPP was higher than those reported for forests in Brazilian Amazonia on more infertile soils. The CUE was also higher, which may be related to the high forest dynamism and natural disturbance rate. These two factors combined to result in amongst the highest NPP values reported for Amazonia.

Journal of Ecology, 2013

1. Pervasive increases in biomass and stem density of tropical forests have been recorded in recent decades, potentially having significant implications for carbon storage, biodiversity and ecosystem function. This trend is widely considered to be the result of multidecadal and global scale growth stimulation arising from increases in atmospheric CO 2 and temperatures. However, contrasting patterns have been recorded across the tropics, and the role of disturbance in driving biomass and stem dynamics has been highlighted as an alternative explanation. 2. Australian tropical forests have rarely been assessed in pan-tropical analyses of long-term dynamics. We have measured recruitment, mortality and growth in 20 permanent plots in tropical forest across north-eastern Australia since 1971. We assess changes in plot level above-ground live biomass (AGB) and stem density, and compare our results with those documented over a similar time frame in the neo-tropics. 3. No significant increase in AGB was found over the 40-year time period. Above-ground biomass tended to increase over the first two decades of the monitoring period and decrease in the final two with gain terms (growth and recruitment) lower than loss terms (mortality) by the final decade (2000s). Stem density significantly decreased over the monitoring period with recruitment consistently lower than mortality. There was large variation in individual plots in their pattern of AGB and stem density changes over time which was consistent with the response of each plot to known disturbance events, including cyclones, pathogen outbreaks and drought. 4. Our results are in contrast to those described for neo-tropical plots which appear to show a widespread pattern of increasing growth and stem density. 5. Synthesis. The trend towards increasing biomass and stem density of tropical forests described for the neo-tropics does not necessarily reflect patterns in areas of the tropics where large-scale natural disturbances are relatively frequent. Australian tropical rain forests are either not increasing in productivity in response to global change, or cyclones and other regional and local mechanisms of change mask any evidence of larger-scale patterns.

Science, 2011

Biotropica, 2007

The Amazon Basin can be divided into two geomorphological regions based on the age of its soils: young (< 30 mya) and old (> 300 mya). We tested the effects of soil age on dung beetle communities by comparing biomass, abundance, and species between reserves in Ecuador on young soils and reserves in Brazil on old soils. Beetle biomass in the old Amazon was one-third that in the young Amazon, and beetle abundance in the old Amazon was one-fourth that in the young Amazon. Species richness, rarefied to equal sample sizes, was not significantly different between old and young soils. These data suggest young soils of the Amazon support a significantly greater biomass and abundance of dung beetles than old soils, but that species richness across the Basin is similar. As dung beetles are bio-indicators of mammals, our data support previous studies indicating a greater biomass of mammals on young versus old Amazon soils.

PloS one, 2015

Tropical forests store large amounts of carbon in tree biomass, although the environmental controls on forest carbon stocks remain poorly resolved. Emerging airborne remote sensing techniques offer a powerful approach to understand how aboveground carbon density (ACD) varies across tropical landscapes. In this study, we evaluate the accuracy of the Carnegie Airborne Observatory (CAO) Light Detection and Ranging (LiDAR) system to detect top-of-canopy tree height (TCH) and ACD across the Osa Peninsula, Costa Rica. LiDAR and field-estimated TCH and ACD were highly correlated across a wide range of forest ages and types. Top-of-canopy height (TCH) reached 67 m, and ACD surpassed 225 Mg C ha-1, indicating both that airborne CAO LiDAR-based estimates of ACD are accurate in tall, high-biomass forests and that the Osa Peninsula harbors some of the most carbon-rich forests in the Neotropics. We also examined the relative influence of lithologic, topoedaphic and climatic factors on regional p...

Antonie van Leeuwenhoek, 2013

Ecology letters, 2015

Significant changes in the composition of tree species have been observed in various forests worldwide. We hypothesised that these changes might result from variable sensitivities of species to global change, and species sensitivities might be quantified, using functional traits. Employing long-term (1978-2010) species abundance data of 48 tree species from a permanent subtropical forest plot, where multiple global change factors have been observed, including soil drying, we examined the relationships between temporal trends in abundance and suits of functional traits. We found that species with high photosynthesis rates, leaf phosphorus and nitrogen concentrations, specific leaf area, hydraulic conductivity, turgor loss point and predawn leaf water potential had increased in abundance, while species with opposite trait patterns had decreased. Our results demonstrate that functional traits underlie tree species abundance dynamics in response to drought stress, thus linking traits to...

Proceedings of the Royal Society B: Biological Sciences, 2007

The ability of a species to invade a community is influenced by the traits of the invader, the resident community and the environment. However, qualitative generalizations are possible. Using a model of perennial plants in a spatiotemporally fluctuating environment, we find that fluctuating environments may be more or less invasible than static environments. Invasibility is strongly dependent on the interaction of the difference in turnover rates of resident and invader populations and the rate of temporal change of the environment. If resident population turnover is faster than the invader's, then invasibility is an initially positive, decreasing function of the period temporal variation, such that invasibility is increased by rapid temporal fluctuations but slightly reduced in slowly fluctuating environments. If resident turnover is slower than the invader's, then invasibility is an initially negative, increasing function of temporal period, such that invasibility is reduced in rapidly changing environment facilitated by slow temporal fluctuations. These results are explained by the relative abilities of resident and invader populations to successfully respond to environmental variation at different temporal scales.

PLOS ONE, 2015

Field studies in Amazonia have found a relationship at continental scales between soil fertility and broad trends in forest structure and function. Little is known at regional scales, however, about how discrete patterns in forest structure or functional attributes map onto underlying edaphic or geological patterns. We collected airborne LiDAR (Light Detection and Ranging) data and VSWIR (Visible to Shortwave Infrared) imaging spectroscopy measurements over 600 km 2 of northwestern Amazonian lowland forests. We also established 83 inventories of plant species composition and soil properties, distributed between two widespread geological formations. Using these data, we mapped forest structure and canopy reflectance, and compared them to patterns in plant species composition, soils, and underlying geology. We found that variations in soils and species composition explained up to 70% of variation in canopy height, and corresponded to profound changes in forest vertical profiles. We further found that soils and plant species composition explained more than 90% of the variation in canopy reflectance as measured by imaging spectroscopy, indicating edaphic and compositional control of canopy chemical properties. We last found that soils explained between 30% and 70% of the variation in gap frequency in these forests, depending on the height threshold used to define gaps. Our findings indicate that a relatively small number of edaphic and compositional variables, corresponding to underlying geology, may be responsible for variations in canopy structure and chemistry over large expanses of Amazonian forest. productivity and aboveground biomass . These patterns in forest structure and function have been attributed to a continental-scale gradient from poorer soils on the Brazilian and Guiana shields, supporting slow-dynamic and high-biomass forests, to richer soils in western Amazonia, supporting fast-dynamic and low-biomass forests [1].

Proceedings of the National Academy of Sciences, 2013

Old-growth forest ecosystems comprise a mosaic of patches in different successional stages, with the fraction of the landscape in any particular state relatively constant over large temporal and spatial scales. The size distribution and return frequency of disturbance events, and subsequent recovery processes, determine to a large extent the spatial scale over which this old-growth steady state develops. Here, we characterize this mosaic for a Central Amazon forest by integrating field plot data, remote sensing disturbance probability distribution functions, and individual-based simulation modeling. Results demonstrate that a steady state of patches of varying successional age occurs over a relatively large spatial scale, with important implications for detecting temporal trends on plots that sample a small fraction of the landscape. Long highly significant stochastic runs averaging 1.0 Mg biomass·ha −1 ·y −1 were often punctuated by episodic disturbance events, resulting in a sawtooth time series of hectare-scale tree biomass. To maximize the detection of temporal trends for this Central Amazon site (e.g., driven by CO 2 fertilization), plots larger than 10 ha would provide the greatest sensitivity. A model-based analysis of fractional mortality across all gap sizes demonstrated that 9.1-16.9% of tree mortality was missing from plot-based approaches, underscoring the need to combine plot and remote-sensing methods for estimating net landscape carbon balance. Old-growth tropical forests can exhibit complex large-scale structure driven by disturbance and recovery cycles, with ecosystem and community attributes of hectare-scale plots exhibiting continuous dynamic departures from a steady-state condition. biodiversity | community composition | gap dynamics | NEP NEE NBP A common assumption in old-growth forest studies is that, in the absence of a directional forcing, ecosystem characteristics and tree species composition should exhibit some type of steady-state behavior (1). Thus, plot-based studies in old-growth tropical forests that observe changing tree species composition (2), increased liana abundance (3), faster turnover rates (4), and forest biomass accumulation (5, 6), are viewed as surprising departures from an expected steady-state condition. However, disturbance events can create a landscape with patches of varying successional age, and the extent to which forest plots representatively sample this mosaic remains an open question. An important issue is how to distinguish directional trends driven by a warming climate, or rising atmospheric CO 2 concentration, from smaller-scale stochastic patterns driven by disturbance and recovery cycles (7, 8).

Ecological Monographs, 2009

The distribution of the diversity and abundance of life on Earth is thought to be shaped by the patterns of plant growth (net primary production, NPP) in the oceans and on land. The well-known latitudinal gradient of species diversity reaches its maximum in tropical rain forests, which are considered to be the most productive ecosystems on the planet. However, this high tropical productivity on land is the opposite of the well-documented distribution of marine productivity, which is greatest in the high-latitude oceans around the poles. This ...

Biotropica, 2011

The Amazon Basin, representing the largest expanse of intact tropical rain forest on the planet, harbors the largest diversity of amphibians and reptiles in the world. Limited elevation and climate differences across the Basin belie one major division of upland forests -geomorphological soil age and induced nutrient levels. We hypothesized that secondary consumers in the leaf litter herpetofauna community on ancient soils of Central Amazonia would exhibit reduced biomass compared with those found on younger soils of Western Amazonia, and that population densities on ancient soils could be driven below viable thresholds, reducing species richness. We found overall herpetofauna abundance, biomass and richness on young soils in Ecuador were significantly greater than those on ancient soils in the Brazilian Amazon. Separately, amphibians were only slightly more abundant, but their biomass on younger soils was twice that on ancient soils. Even more impressive was the variation exhibited by lizards: abundance was not significantly different, but biomass was five times greater on younger soils. Diversity of both taxa was greater on young soils. The most important driver of differences in herpetofauna biomass, abundance and possibly diversity across Amazonia may be the underlying geomorphologic differences. Reduced primary productivity on ancient soils appears to reverberate up the food chain, leaving fewer resources for higher trophic levels. We suggest that conservation initiatives must compensate for reduced biomass on ancient soils through increased reserve size, especially as forest fragmentation escalates. This study highlights the importance of including biomass as a standard measure in herpetofauna sampling.

Nature Communications

It is generally accepted that animal heartbeat and lifespan are often inversely correlated, however, the relationship between productivity and longevity has not yet been described for trees growing under industrial and pre-industrial climates. Using 1768 annually resolved and absolutely dated ring width measurement series from living and dead conifers that grew in undisturbed, high-elevation sites in the Spanish Pyrenees and the Russian Altai over the past 2000 years, we test the hypothesis of grow fast-die young. We find maximum tree ages are significantly correlated with slow juvenile growth rates. We conclude, the interdependence between higher stem productivity, faster tree turnover, and shorter carbon residence time, reduces the capacity of forest ecosystems to store carbon under a climate warming-induced stimulation of tree growth at policy-relevant timescales.

PloS one, 2018

Using data from 50 long-term permanent plots from across Venezuelan forests in northern South America, we explored large-scale patterns of stem turnover, aboveground biomass (AGB) and woody productivity (AGWP), and the relationships between them and with potential climatic drivers. We used principal component analysis coupled with generalized least squares models to analyze the relationship between climate, forest structure and stem dynamics. Two major axes associated with orthogonal temperature and moisture gradients effectively described more than 90% of the environmental variability in the dataset. Average turnover was 1.91 ± 0.10% year-1 with mortality and recruitment being almost identical, and close to average rates for other mature tropical forests. Turnover rates were significantly different among regions (p &lt; 0.001), with the lowland forests in Western alluvial plains being the most dynamic, and Guiana Shield forests showing the lowest turnover rates. We found a weak pos...

Biodiversity data journal, 2017

This study aimed to report the long-term monitoring of diversity and structure of the tree community in a protected semideciduous Atlantic Forest in the South of Minas Gerais State, Southeast Brazil. The study was conducted in two stands (B and C), each with 26 and 38 10 m x 30 m plots. Censuses of stand B were conducted in 2000, 2005 and 2011, and stand C in 2001, 2006 and 2011. In both stands, the most abundant and important species for biomass accumulation over the inventories were trees larger than 20 cm of diameter, which characterize advanced successional stage within the forest. The two surveyed stands within the studied forest presented differences in structure, diversity and species richness over the time.

Proceedings of the National Academy of Sciences

Large uncertainties still dominate the hypothesis of an abrupt large-scale shift of the Amazon forest caused by climate change [Amazonian forest dieback (AFD)] even though observational evidence shows the forest and regional climate changing. Here, we assess whether mitigation or adaptation action should be taken now, later, or not at all in light of such uncertainties. No action/later action would result in major social impacts that may influence migration to large Amazonian cities through a causal chain of climate change and forest degradation leading to lower river-water levels that affect transportation, food security, and health. Net-present value socioeconomic damage over a 30-year period after AFD is estimated between US dollar (USD) $957 billion (×109) and $3,589 billion (compared with Gross Brazilian Amazon Product of USD $150 billion per year), arising primarily from changes in the provision of ecosystem services. Costs of acting now would be one to two orders of magnitude...

The New phytologist, 2018

Tree mortality rates appear to be increasing in moist tropical forests (MTFs) with significant carbon cycle consequences. Here, we review the state of knowledge regarding MTF tree mortality, create a conceptual framework with testable hypotheses regarding the drivers, mechanisms and interactions that may underlie increasing MTF mortality rates, and identify the next steps for improved understanding and reduced prediction. Increasing mortality rates are associated with rising temperature and vapor pressure deficit, liana abundance, drought, wind events, fire and, possibly, COfertilization-induced increases in stand thinning or acceleration of trees reaching larger, more vulnerable heights. The majority of these mortality drivers may kill trees in part through carbon starvation and hydraulic failure. The relative importance of each driver is unknown. High species diversity may buffer MTFs against large-scale mortality events, but recent and expected trends in mortality drivers give re...

Scientific reports, 2017

Tropical forests store large amounts of biomass despite they generally grow in nutrient-poor soils, suggesting that the role of soil characteristics in the structure and dynamics of tropical forests is complex. We used data for &gt;34 000 trees from several permanent plots in French Guiana to investigate if soil characteristics could predict the structure (tree diameter, density and aboveground biomass), and dynamics (growth, mortality, aboveground wood productivity) of nutrient-poor tropical forests. Most variables did not covary with site-level changes in soil nutrient content, indicating that nutrient-cycling mechanisms other than the direct absorption from soil (e.g. the nutrient uptake from litter, the resorption, or the storage of nutrients in the biomass), may strongly control forest structure and dynamics. Ecosystem-level adaptations to low soil nutrient availability and long-term low levels of disturbance may help to account for the lower productivity and higher accumulatio...

Scientific Data

Road construction and paving bring socioeconomic benefits to receiving regions but can also be drivers of deforestation and land cover change. Road infrastructure often increases migration and illegal economic activities, which in turn affect local hydrology, wildlife, vegetation structure and dynamics, and biodiversity. To evaluate the full breadth of impacts from a coupled natural-human systems perspective, information is needed over a sufficient timespan to include pre-and post-road paving conditions. In addition, the spatial scale should be appropriate to link local human activities and biophysical system components, while also allowing for upscaling to the regional scale. A database was developed for the tri-national frontier in the Southwestern Amazon, where the Inter-Oceanic Highway was constructed through an area of high biological value and cultural diversity. Extensive socioeconomic surveys and botanical field work are combined with remote sensing and reanalysis data to provide a rich and unique database, suitable for coupled natural-human systems research.

eLife, 2016

When 2 Mha of Amazonian forests are disturbed by selective logging each year, more than 90 Tg of carbon (C) is emitted to the atmosphere. Emissions are then counterbalanced by forest regrowth. With an original modelling approach, calibrated on a network of 133 permanent forest plots (175 ha total) across Amazonia, we link regional differences in climate, soil and initial biomass with survivors&#39; and recruits&#39; C fluxes to provide Amazon-wide predictions of post-logging C recovery. We show that net aboveground C recovery over 10 years is higher in the Guiana Shield and in the west (21 ±3 Mg C ha-1) than in the south (12 ±3 Mg C ha-1) where environmental stress is high (low rainfall, high seasonality). We highlight the key role of survivors in the forest regrowth and elaborate a comprehensive map of post-disturbance C recovery potential in Amazonia.

Scientific Reports

We observed strong positive relationships between soil properties and forest dynamics of growth and mortality across twelve primary lowland tropical forests in a phosphorus-poor region of the Guiana Shield. Average tree growth (diameter at breast height) increased from 0.81 to 2.1 mm yr−1 along a soil texture gradient from 0 to 67% clay, and increasing metal-oxide content. Soil organic carbon stocks in the top 30 cm ranged from 30 to 118 tons C ha−1, phosphorus content ranged from 7 to 600 mg kg−1 soil, and the relative abundance of arbuscular mycorrhizal fungi ranged from 0 to 50%, all positively correlating with soil clay, and iron and aluminum oxide and hydroxide content. In contrast, already low extractable phosphorus (Bray P) content decreased from 4.4 to &lt;0.02 mg kg−1 in soil with increasing clay content. A greater prevalence of arbuscular mycorrhizal fungi in more clayey forests that had higher tree growth and mortality, but not biomass, indicates that despite the greater ...

Ecology and evolution, 2017

With many sophisticated methods available for estimating migration, ecologists face the difficult decision of choosing for their specific line of work. Here we test and compare several methods, performing sanity and robustness tests, applying to large-scale data and discussing the results and interpretation. Five methods were selected to compare for their ability to estimate migration from spatially implicit and semi-explicit simulations based on three large-scale field datasets from South America (Guyana, Suriname, French Guiana and Ecuador). Space was incorporated semi-explicitly by a discrete probability mass function for local recruitment, migration from adjacent plots or from a metacommunity. Most methods were able to accurately estimate migration from spatially implicit simulations. For spatially semi-explicit simulations, estimation was shown to be the additive effect of migration from adjacent plots and the metacommunity. It was only accurate when migration from the metacomm...

Science Advances

Intact tropical forests, free from substantial anthropogenic influence, store and sequester large amounts of atmospheric carbon but are currently neglected in international climate policy. We show that between 2000 and 2013, direct clearance of intact tropical forest areas accounted for 3.2% of gross carbon emissions from all deforestation across the pantropics. However, full carbon accounting requires the consideration of forgone carbon sequestration, selective logging, edge effects, and defaunation. When these factors were considered, the net carbon impact resulting from intact tropical forest loss between 2000 and 2013 increased by a factor of 6 (626%), from 0.34 (0.37 to 0.21) to 2.12 (2.85 to 1.00) petagrams of carbon (equivalent to approximately 2 years of global land use change emissions). The climate mitigation value of conserving the 549 million ha of tropical forest that remains intact is therefore significant but will soon dwindle if their rate of loss continues to accele...

Ecosystems

Assessment of forest carbon (C) stock and sequestration and the influence of forest harvesting and climatic variations are important issues in global forest ecology. Quantitative studies of the C balance of tropical forests, such as those in Papua New Guinea (PNG), are also required for forest-based climate change mitigation initiatives. We develop a hierarchical Bayesian model (HBM) of aboveground forest C stock and sequestration in primary, selectively harvested, and El Niño Southern Oscillation (ENSO)-effected lowland tropical forest from 15years of Permanent Sample Plot (PSP) census data for PNG consisting of 121 plots in selectively harvested forest, and 35 plots in primary forest. Model parameters indicated: C stock in aboveground live biomass (AGLB) of 137±9 (95% confidence interval (CI)) MgCha−1 in primary forest, compared with 62±18MgCha−1 for selectively harvested forest (55% difference); C sequestration in primary forest of 0.23±1.70MgCha−1y−1, which was lower than in sel...

Forests

Studies of dynamics and biomass accumulation are essential for understanding forest functioning and productivity. They are also valuable when planning strategies for the conservation and sustainable use of natural resources. This study was conducted in five one-hectare plots of gallery forest in the Orinoco basin (three in terra firme and two in igapó floodplains), located in the Tomogrande Reserve, Santa Rosalía municipality, Vichada, Colombia. The differences between these forest types were determined and quantified considering diversity, floristic composition, aboveground biomass, forest dynamics and the influence of soils’ physicochemical composition. Terra firme forests were more diverse (Fisher’s α = 30.4) and had higher mortality and recruitment rates than igapó forests but there were no significant differences in stem turnover rates between forest types. Relative tree growth rate was also higher in terra firme than in igapó, but the opposite was found for biomass change (1.4...

Global Ecology and Biogeography, 2010

Aim The size structure of a forest canopy is an important descriptor of the forest environment that may yield information on forest biomass and ecology. However, its variability at regional scales is poorly described or understood because of the still prohibitive cost of very high-resolution imagery as well as the lack of an appropriate methodology. We here employ a novel approach to describe and map the canopy structure of tropical forests. Location Amazonia. Methods We apply Fourier transform textural ordination (FOTO) techniques to subsamples of very high-resolution satellite imagery freely available through virtual globe software (e.g. Google Earth®) to determine two key structural variables: apparent mean crown size and heterogeneity in crown size. A similar approach is used with artificial forest canopy images generated by the light interaction model (discrete anisotropic radiative transfer, DART) using three-dimensional stand models. The effects of sun and viewing angles are explored on both model and real data. Results It is shown that in the case of canopies dominated by a modal size class our approach can predict mean canopy size to an accuracy of 5%. In Amazonia, we could evidence a clear macrostructure, despite considerable local variability. Apparent crown size indeed consistently increases from about 14 m in wet northwest Amazonia to more than 17 m for areas of intermediate dry season length (1-3 months) in south and east Amazonia, before decreasing again towards the ecotone with the Cerrado savanna biome. This general trend reflects the known variation of other forest physiognomic properties (height) reported for South America and Africa. Some regions show significantly greater canopy heterogeneity, a feature that may be related to substratum, perturbation rate and/or forest turnover rate. Main conclusions Our results demonstrate the feasibility and interest of largescale assessment of rain forest canopy structure.

Plant Ecology & Diversity, 2013

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Global Ecology and Biogeography

This is an open access article under the terms of the Creat ive Commo ns Attri bution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

Soil Use and Management

HAL is a multi-disciplinary open access archive for the deposit and dissemination of scientific research documents, whether they are published or not. The documents may come from teaching and research institutions in France or abroad, or from public or private research centers. L'archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d'enseignement et de recherche français ou étrangers, des laboratoires publics ou privés.

New Phytologist, 2010

The large-scale loss of Amazonian rainforest under some future climate scenarios has generally been considered to be driven by increased drying over Amazonia predicted by some general circulation models (GCMs). However, the importance of rainfall relative to other drivers has never been formally examined. • Here, we conducted factorial simulations to ascertain the contributions of four environmental drivers (precipitation, temperature, humidity and CO 2 ) to simulated changes in Amazonian vegetation carbon (C veg ), in three dynamic global vegetation models (DGVMs) forced with climate data based on HadCM3 for four SRES scenarios. • Increased temperature was found to be more important than precipitation reduction in causing losses of Amazonian C veg in two DGVMs (Hyland and TRIFFID), and as important as precipitation reduction in a third DGVM (LPJ). Increases in plant respiration, direct declines in photosynthesis and increases in vapour pressure deficit (VPD) all contributed to reduce C veg under high temperature, but the contribution of each mechanism varied greatly across models. Rising CO 2 mitigated much of the climate-driven biomass losses in the models. • Additional work is required to constrain model behaviour with experimental data under conditions of high temperature and drought. Current models may be overly sensitive to long-term elevated temperatures as they do not account for physiological acclimation.

Journal of Ecology, 2020

1. The intensity and frequency of severe droughts in the Amazon region have increased in the recent decades. These extreme events are associated with changes in forest dynamics, biomass and floristic composition. However, most studies of drought response have focused on upland forests with deep water tables, which may be especially sensitive to drought. Palms, which tend to dominate the less well-drained soils, have also been neglected. The relative neglect of shallow water tables and palms is a significant concern for our understanding of tropical drought impacts, especially as one-third of Amazon forests grow on shallow water tables (<5 m deep). 2. We evaluated the drought response of palms and trees in forests distributed over a 600 km transect in central-southern Amazonia, where the landscape is dominated by shallow water table forests (SWTF). We compared vegetation dynamics before and following the 2015-2016 El Nino drought, the hottest and driest on record for the region (−214 mm of cumulative water deficit). 3. We observed no change in stand mortality rates and no biomass loss in response to drought in these forests. Instead, we observed an increase in recruitment rates, which doubled to 6.78% year-1 ± 4.40 (M ± SD) during 2015-2016 for palms and increased by half for trees (to 2.92% year-1 ± 1.21), compared to rates in the pre-El-Nino interval. Within these SWTF, mortality and recruitment rates varied as a function of climatic drought intensity and water table depth for both palms and trees, with mortality being greatest in climatically and hydrologically wetter environments and recruitment greatest in drier environments. Across our transect, there was a significant increase over time in tree biomass. 4. Synthesis. Our results indicate that forests growing over shallow water tablesrelatively under-studied vegetation that nonetheless occupies one-third of Amazon forests-are remarkably resistant to drought. These findings are consistent with

New Phytologist, 2020

Soybean is one of the most important economic crops in the world. However, the salinization of soil results in the decrease of soybean yield as it is only a moderately salt-tolerant crop. We treated three soybean cultivars with low and high concentrations of NaCl. The differentially expressed genes between the control group and the salt treatment group were identified by mRNA sequencing and analyzed by gene ontology and Kyoto encyclopedia of genes and genomes annotations. We performed weighted gene co-expression network analysis on all samples and found genes most related to the phenotype. After verifying the results of differentially expressed genes by quantitative PCR, we finally identified Glyma06G01990, Glyma08G22730, Glyma019G05140, and Glyma06G20160 as key genes affecting the soybean growth under salt stress.

Journal of Tropical Ecology, 2016

Describing and understanding growth patterns in tropical forests is crucial to assessing their role in carbon balance. Growth and vital rates of protected gallery forest in central Brazil were estimated, based on six measurement intervals between 1985 and 2009. The sample consisted of all stems ࣙ 10 cm diameter at breast height measured in 151 permanent plots (10 × 20 m), distributed in 10 transects perpendicular to the watercourse and 100 m apart from each other. Statistical significance of changes in density, basal area, growth and vital rates were tested using Wilcoxon signed-rank test. Vital rates oscillated during the study period. Growth, recruitment and turnover rates fluctuated, but had a net decrease over the whole study period, whereas mortality seemed to be affected by a high disturbance event during the 1994-1999 period. The oscillatory behaviour of growth suggests that the forest is pulsating around a stable state (dynamic equilibrium). Nonetheless, persistence of decelerating growth trends may force the site's carrying capacity to a lower density or biomass state.

Remote Sensing, 2014

Human land use legacies have significant and long-lasting ecological impacts across landscapes. Investigating ancient (>400 years) legacy effects can be problematic due to the difficulty in detecting specific, historic land uses, especially those hidden beneath dense canopies. Caracol, the largest (~200 km 2) Maya archaeological site in Belize, was abandoned ca. A.D. 900, leaving behind myriad structures, causeways, and an extensive network of agricultural terraces that persist beneath the architecturally complex tropical forest canopy. Airborne LiDAR enables the detection of these below-canopy archaeological features while simultaneously providing a detailed record of the aboveground 3-dimensional canopy organization, which is indicative of a forest's ecological function. Here, this remote sensing technology is used to determine the effects of ancient land use legacies on contemporary forest structure. Canopy morphology was assessed by extracting LiDAR point clouds (0.25 ha plots) from LiDAR-identified terraced (n = 150) and non-terraced (n = 150) areas on low (0°-10°), medium (10°-20°), and high (>20°) slopes. We calculated the average canopy height, canopy openness, and vertical diversity from the LiDAR returns, with topographic features (i.e., slope, elevation, and aspect) as covariates. Using a PerMANOVA procedure, we determined that forests growing on agricultural terraces exhibited significantly different canopy structure from those growing on non-terraced land. Terraces appear to mediate the effect of slope, resulting in less structural variation between slope and non-sloped land and yielding taller,

Revista Chilena de Historia Natural, 2015

Background: Plants in a seasonal environment that become close to the artificial lake after dams construction may have enhanced growth or die due to the new conditions. Changes in mortality or growth rates lead to changes in community diversity, and we do not know if the community functions will change; our main hypothesis was that a few years after impoundment, species richness and diversity will increase because the increased supply of water would favor the establishment of water-associated species. Therefore, we evaluated the consequences of proximity of three dry seasonal forests to the water table after damming, with a dynamic evaluation of the species studied to understand changes in diversity in these areas. We sampled 60 plots of 20×10 m in each forest and measured all trees with a diameter equal to or greater than 4.77 cm before damming and 2 and 4 years after damming. We calculated dynamic rates and compared species changes during these periods. We also compared diversity and richness using Shannon index and rarefaction curves. Results: Many species had high dynamic rates and many trees of specialists of dry forests died; conversely, others had high growth rates. Some typical species of riparian forests were found only after damming, also enhancing forest richness in deciduous forests. In general, the deciduous forest communities seemed to change to a typical riparian forest, but many seasonal specialist species still had high recruitment and growth rate, maintaining the seasonal traits, such as dispersion by wind and deciduousness in the forests, where an entire transformation did not occur. Conclusions: We conclude that even with the increment in basal area and recruitment of many new species, the impacts of damming and consequent changes will never lead to the same functions as in a riparian forest.

Biotropica, 2020

Forests, 2020

Understanding the stand dynamics of tropical production forests is essential for determining the sustainability of a polycyclic selective logging system, but limited related studies have addressed the impacts of illegal logging over time. Myanmar faces the extensive degradation of traditional production forests with a 160-year logging history, but the cause of this degradation and how to balance legal and/or illegal disturbances with recovery in over-logged forests remain unclear. The present study investigated stand structural changes over 5 years after official legal logging operations using two 1-ha (100 × 100 m) sample plots. For 5 years after logging, the volume of trees with a diameter at breast height (DBH) ≥ 20 cm decreased by 46.0% from 121 to 65.1 m3 ha−1, with a significant loss of the first- and second-grade species group (Tectona grandis Linn. f. and Xylia xylocarpa (Roxb.) Taub.) from 48.3 to 6.8 m3 ha−1. The total tree loss owing to official logging operations, mainly...

Journal of Ecology, 2012

1. Lianas are a conspicuous element of many tropical forests, accounting for up to 40% of woody stem density and 20% of species richness in seasonal forests. However, lianas have seldom been surveyed at sufficiently large spatial scales to allow an assessment of the importance of habitat variables in structuring liana communities. 2. We compare the association patterns of 82 liana species and an equivalent sample of tree species on the 50 ha Forest Dynamics Project plot on Barro Colorado Island, Panama, with topographic habitat variables (high and low plateau, slope, swamp and streamside), and thirteen mapped soil chemical variables. In addition, we test for liana species associations with canopy disturbance using a canopy height map of the plot generated using light detection and ranging. 3. For all liana species combined, densities differed among topographic habitat types in the plot, with significantly higher densities on the seasonally drier lower plateau habitat (1044 individuals ha)1) than the moister slope habitat (729 individuals ha)1). Lianas were also significantly more abundant than expected in areas with low canopy height. 4. The proportion of liana species associated with one or more topographic habitat variables (44%) was significantly lower than that for trees (66%). Similarly, liana species were significantly less frequently associated with PC axes derived from soil chemical variables (21%) than trees (52%). The majority of liana species (63%) were significantly associated with areas of the plot with low canopy height reflecting an affinity for treefall gaps. 5. Synthesis. The habitat associations detected here suggest that liana density is associated primarily with canopy disturbance, and to a lesser extent with topography and soil chemistry. Relative to trees, few liana species were associated with local variation in topography and soil chemistry, suggesting that nutrient availability exerts only weak effects on liana community composition compared to trees. Results from this study support the contention that increases in forest disturbance rates are a driver of recently observed increases in liana abundance and biomass in neotropical forests.

Forests, 2016

Crown defoliation is extensively monitored across European forests within the International Cooperative Programme (ICP) as a proxy of forest health. Climate warming and drought are assumed to be the major drivers of tree growth and crown defoliation, particularly in seasonally dry areas such as the Mediterranean Basin. Here we analyse how climate, drought, and atmospheric processes are related to defoliation time series of five oak and five pine species that are dominant across Spanish ICP monitoring forest plots. We found that warmer and drier conditions during April were linked to enhanced defoliation. Warm April conditions were also related to high values of the Atlantic Multi-decadal Oscillation (AMO), thereby indicating large-scale links between atmospheric processes, temperature, and defoliation patterns. The temperature-defoliation association was species-specific since some tree species from wet sites showed a weak association (e.g., Quercus robur L.) whereas others from dry sites (e.g., Quercus ilex L.) presented the strongest associations. The latter tree species could be considered vulnerable to heat stress in terms of leaf shedding. We also explored if defoliation was related to radial growth and found negative associations in relatively dry areas. Warmer and drier conditions linked to increasing AMO values are connected to the post-1990s rise of defoliation in Spanish ICP forest plots. Combined incorporation of defoliation and growth into mortality models can provide insights into assessments of forest vulnerability.

Journal of Vegetation Science, 2010

Question: What are the relative roles of tree growth, mortality and recruitment in variations of aboveground biomass in tropical forests? Location: Paracou, French Guiana. Methods: We quantified the contribution of growth, recruitment and mortality to total biomass of stands (trees DBH ! 10 cm) in six 6.25-ha permanent plots over 16 yr. Live biomass stocks and fluxes were computed for four separate size classes. Results: All plots showed increasing biomass stocks over the study period, with an average value of 10.9 Mg ha À 1 yr À 1. Plots aggrading biomass were characterized by either minor biomass losses due to mortality or substantial increases in the biomass of large trees (DBH ! 60 cm). Conclusions: Within the study period, the rarity of mortality events could not counterbalance the slow permanent increase in biomass, resulting in an apparent increase in biomass. Accounting for such rare events results in no net change in biomass balance.

Trees, 2010

There is growing evidence that tree turnover in tropical forests has increased over the last decades in permanent sample plots. This phenomenon is generally attributed to the increase in atmospheric CO 2 , but other causes cannot be ruled out. A proper evaluation of historical shifts in tree turnover requires data over longer periods than used so far. Here, we propose two methods to use treering data for detecting long-term changes in tree turnover. We apply these methods to two non-pioneer tree species in a Bolivian moist forest. First, we checked for temporal changes in the frequency of growth releases to determine whether this frequency has increased over time. Second, we calculated the degree of temporal autocorrelation-a measure that indicates temporal changes in growth rates that are likely related to canopy dynamics-and checked for changes in this parameter over time. In addition, we performed analyses that corrected for ontogenetic increases in the measures used by analyzing residuals from sizegrowth relations. No evidence for the occurrence of a large-scale disturbance was found as we did not observe synchronization in the occurrence of releases in time. For both species, we did not detect changes in autocorrelation or release frequency over the last 200-300 years. Only in one size category, we found increased release frequency over time, probably as a result of a remaining ontogenetic effect. In all, our analyses do not provide evidence for long-term changes in tree turnover in the study area. We discuss the suitability of the proposed methods. Keywords Forest dynamics Á Growth release Á Autocorrelated growth Á Ontogeny Á Tree turnover Á Bolivia Communicated by A. Bräuning. Contribution to the special issue ''Tropical Dendroecology''.

Ecology Letters, 2005

It has recently been reported that humid tropical forests are changing rapidly in response to global anthropogenic change and that these forests experience greater tree mortality and even fire during droughts associated with El Niño events. The former reports are controversial largely because a single method has been used-repeated censuses of tree plots. The latter reports focus on recent extreme El Niño events. Here, we show that flower and seed production both increase during El Niño events in an old-growth tropical forest in Panama. Flower production, but not seed production, has also increased over the past 18 years. The sustained increase in flower production was greater for 33 liana species than for 48 tree species. These results indicate that moderate El Niño events favour seed production, document long-term increases in flower production for the first time, and corroborate long-term increases in the importance of lianas using independent methods. Changes in levels of solar irradiance might contribute to all three patterns.

Ecosphere, 2019

The importance and challenges of detecting changes in forest mortality rates.

Global Change Biology, 2011

Substantial uncertainty surrounds how forest ecosystems will respond to the simultaneous impacts of multiple global change drivers. Long-term forest dynamics are sensitive to changes in tree mortality rates; however, we lack an understanding of the relative importance of the factors that affect tree mortality across different spatial and temporal scales. We used the US Forest Service Forest Inventory and Analysis database to evaluate the drivers of tree mortality for eastern temperate forest at the individual-level across spatial scales from tree to landscape to region. We investigated 13 covariates in four categories: climate, air pollutants, topography, and stand characteristics. Overall, we found that tree mortality was most sensitive to stand characteristics and air pollutants. Different functional groups also varied considerably in their sensitivity to environmental drivers. This research highlights the importance of considering the interactions among multiple global change agents in shaping forest ecosystems.

Proceedings of the Royal Society B: Biological Sciences, 2012

The response of tropical forests to global climate variability and change remains poorly understood. Results from long-term studies of permanent forest plots have reported different, and in some cases opposing trends in tropical forest dynamics. In this study, we examined changes in tree growth rates at four long-term permanent tropical forest research plots in relation to variation in solar radiation, temperature and precipitation. Temporal variation in the stand-level growth rates measured at five-year intervals was found to be positively correlated with variation in incoming solar radiation and negatively related to temporal variation in night-time temperatures. Taken alone, neither solar radiation variability nor the effects of night-time temperatures can account for the observed temporal variation in tree growth rates across sites, but when considered together, these two climate variables account for most of the observed temporal variability in tree growth rates. Further analys...

Ecological Studies, 2016

, for their contributions to the discussions during the symposium; Veronique Allain, Connor Anderson, Andres Hildebrandt and Manuel Rojas for facilitating in many ways the development of the symposium; Sonia Gonzáles (MINAM) and Luis Rosa-Pérez (GIZ) for being instrumental in the local organization of the symposium; Lily Rodríguez, Ione Anderson and David Cooper for their efforts in the organization of the International Symposium on Biodiversity and Climate Change, preparation of the Lima Declaration on Biodiversity and Climate Change and preparation of this CBD Technical Series publication. The editorial work provided by Lily Rodriguez and Ione Anderson is also greatly appreciated. Biodiversity and Climate Change BOX A THE STRATEGIC PLAN FOR BIODIVERSITY 2011-2020 AND THE AICHI BIODIVERSITY TARGETS Vision The vision for the new plan is: ''Living in Harmony with Nature'' where ''By 2050, biodiversity is valued, conserved, restored and wisely used, maintaining ecosystem services, sustaining a healthy planet and delivering benefits essential for all people. '' Mission The mission of the new plan is to ''take effective and urgent action to halt the loss of biodiversity in order to ensure that by 2020 ecosystems are resilient and continue to provide essential services, thereby securing the planet's variety of life, and contributing to human well-being, and poverty eradication. To ensure this, pressures on biodiversity are reduced, ecosystems are restored, biological resources are sustainably used and benefits arising out of utilization of genetic resources are shared in a fair and equitable manner; adequate financial resources are provided, capacities are enhanced, biodiversity issues and values mainstreamed, appropriate policies are effectively implemented, and decision-making is based on sound science and the precautionary approach. '' Aichi Biodiversity Targets (The text of the targets in this box has been abridged. For the full official text, please refer to www.cbd.int/sp) Strategic Goal A: Address the Underlying Causes of Biodiversity Loss Consideration of the IPCC 5th Report on Mitigation

Acta Botanica Brasilica, 2010

As comunidades arbóreas de florestas tropicais localizadas em regiões com clima sazonal tendem a ajustar a fenologia da queda de folhas e da produção de flores e frutos à sazonalidade climática. Neste estudo monitoramos a comunidade arbórea de uma floresta semidecidual no período de quatro anos (2001 a 2004), a fim de analisar a relação entre o número de espécies perdendo folhas, florescendo e frutificando e a variação anual do comprimento do dia, precipitação e temperatura durante o período de observação. Além disso, avaliamos se essas três fenofases repetem os mesmos padrões em anos sucessivos. Regressões lineares simples indicaram que o número de espécies perdendo folhas foi negativamente relacionado com as três variáveis ambientais para os quatro anos de estudo, sendo o comprimento do dia e a temperatura os melhores preditores para esta fenofase. Houve também relação significativa do comprimento do dia com o número de espécies florescendo e frutificando nos quatro anos, porém, p...

Forests, 2019

Long-term studies of the dynamics of managed forests in tropical regions are lacking. This study aimed to evaluate the dynamics of a tropical forest, over a 25-year period, that was experimentally logged in 1987 and 1988 and submitted to three different cutting intensities. All trees with diameter at breast height (DBH) ≥ 10 cm have been measured annually since 1990. The three logging intensities that were applied were: light (T1)-trees harvested with DBH ≥ 55 cm; medium (T2)-DBH ≥ 50 cm; and heavy (T3)-DBH ≥ 40 cm. Control plots (T0) were also monitored. The highest mean annual mortality rates (1.82% ± 0.38), recruitment rates (2.93% ± 0.77) and diameter increments (0.30 ± 0.02 cm) occurred in the T3 treatment. Shifts in dynamics of the forest were mainly caused by a striking increase in a fast-growing pioneer species and their high mortality rates. The loss in stocking caused by mortality was greater than to that of replacement by recruitment. The results demonstrated that selecti...

The American Naturalist, 2006

Although habitat fragmentation is a major threat to global biodiversity, the demographic mechanisms underlying species loss from tropical forest remnants remain largely unexplored. In particular, no studies at the landscape scale have quantified fragmentation's impacts on colonization, extinction, and local population growth simultaneously. In central Amazonia, we conducted a multiyear demographic census of 292 populations of two leaf-inhabiting (i.e., epiphyllous) bryophyte species transplanted from continuous forest into a network of 10 study sites ranging from 1, 10, and 100 to 110,000 ha in size. All populations experienced significantly positive local growth () and a nearly constant per-generational l 1 1 extinction probability (15%). However, experimental leaf patches in reserves of ≥100 ha experienced nearly double (48%) the colonization probability observed in small reserves (27%), suggesting that the proximate cause of epiphyll species loss in small fragments (≤10 ha) is reduced colonization. Nonetheless, populations of small fragments exhibit rates of colonization above patch extinction, positive local growth, and low temporal variation, which are features that should theoretically reduce the probability of extinction. This result suggests that for habitat-tracking metapopulations subject to frequent and stochastic turnover events, including epiphylls, colonization/extinction ratios must be maintained well above unity to ensure metapopulation persistence.

Nature, 2022

This is a repository copy of Tropical tree mortality has increased with rising atmospheric water stress.