Quantifying the non-equilibrium activity of an active colloid
2020, Soft Matter
https://doi.org/10.1039/D0SM00398KAbstract
Active matter systems exhibit rich emergent behavior due to constant injection and dissipation of energy at the level of individual agents. We characterize the dissipation of single active colloids.
References (92)
- C. Bechinger, R. Di Leonardo, H. Löwen, C. Reichhardt, G. Volpe, and G. Volpe, Reviews of Modern Physics 88, 045006 (2016).
- A. Zöttl and H. Stark, Journal of Physics: Condensed Matter 28, 253001 (2016).
- M. E. Cates and J. Tailleur, Annu. Rev. Condens. Matter Phys. 6, 219 (2015).
- J. Palacci, S. Sacanna, A. P. Steinberg, D. J. Pine, and P. M. Chaikin, Science 339, 936 (2013).
- I. A. Martínez, É. Roldán, L. Dinis, and R. A. Rica, Soft matter 13, 22 (2017).
- P. Pietzonka, É. Fodor, C. Lohrmann, M. E. Cates, and U. Seifert, Physical Review X 9, 041032 (2019).
- T. Ekeh, M. E. Cates, and É. Fodor, arXiv preprint arXiv:2002.05932 (2020).
- V. Holubec, S. Steffenoni, G. Falasco, and K. Kroy, arXiv preprint arXiv:2001.10448 (2020).
- U. Seifert, Reports on progress in physics 75, 126001 (2012).
- T. Speck, EPL (Europhysics Letters) 114, 30006 (2016).
- D. Mandal, K. Klymko, and M. R. DeWeese, Physical review letters 119, 258001 (2017).
- G. Szamel, arXiv preprint arXiv:1909.11684 (2019).
- É. Fodor, C. Nardini, M. E. Cates, J. Tailleur, P. Visco, and F. van Wijland, Physical review letters 117, 038103 (2016).
- P. Pietzonka and U. Seifert, Journal of Physics A: Math- ematical and Theoretical 51, 01LT01 (2017).
- S. Ramaswamy, Annu. Rev. Condens. Matter Phys. 1, 323 (2010).
- M. C. Marchetti, J.-F. Joanny, S. Ramaswamy, T. B. Liverpool, J. Prost, M. Rao, and R. A. Simha, Reviews of Modern Physics 85, 1143 (2013).
- G. Gompper, R. G. Winkler, T. Speck, A. Solon, C. Nar- dini, F. Peruani, H. Löwen, R. Golestanian, U. B. Kaupp, L. Alvarez, et al., Journal of Physics: Condensed Matter 32, 193001 (2020).
- M. Xu, J. L. Ross, L. Valdez, and A. Sen, Physical review letters 123, 128101 (2019).
- A.-Y. Jee, Y.-K. Cho, S. Granick, and T. Tlusty, Proceedings of the National Academy of Sciences 115, E10812 (2018).
- T. Sanchez, D. T. Chen, S. J. DeCamp, M. Heymann, and Z. Dogic, Nature 491, 431 (2012).
- S. C. Takatori, W. Yan, and J. F. Brady, Physical review letters 113, 028103 (2014).
- D. Needleman and Z. Dogic, Nature Reviews Materials 2, 1 (2017).
- J. Prost, F. Jülicher, and J.-F. Joanny, Nature Physics 11, 111 (2015).
- G. Duclos, C. Erlenkämper, J.-F. Joanny, and P. Sil- berzan, Nature Physics 13, 58 (2017).
- A. Attanasi, A. Cavagna, L. Del Castello, I. Giardina, T. S. Grigera, A. Jelić, S. Melillo, L. Parisi, O. Pohl, E. Shen, et al., Nature physics 10, 691 (2014).
- C. Scholz, S. Jahanshahi, A. Ldov, and H. Löwen, Nature communications 9, 1 (2018).
- A. Bottinelli, D. T. Sumpter, and J. L. Silverberg, Phys- ical review letters 117, 228301 (2016).
- H. Chaté, Annual Review of Condensed Matter Physics 11 (2020).
- S. C. Takatori and J. F. Brady, Physical Review E 91, 032117 (2015).
- M. Sandoval, Physical Review E 101, 012606 (2020).
- D. Klotsa, Soft matter 15, 8946 (2019).
- H. Löwen, The Journal of Chemical Physics 152, 040901 (2020).
- A. K. Omar, Z.-G. Wang, and J. F. Brady, Physical Review E 101, 012604 (2020).
- K. van der Vaart, M. Sinhuber, A. M. Reynolds, and N. T. Ouellette, Science advances 5, eaaw9305 (2019).
- A. Cavagna and I. Giardina, Annu. Rev. Condens. Matter Phys. 5, 183 (2014).
- S. Ciliberto, Physical Review X 7, 021051 (2017).
- F. Gnesotto, F. Mura, J. Gladrow, and C. Broedersz, Reports on Progress in Physics 81, 066601 (2018).
- F. Mura, G. Gradziuk, and C. P. Broedersz, Soft Matter 15, 8067 (2019).
- D. S. Seara, V. Yadav, I. Linsmeier, A. P. Tabatabai, P. W. Oakes, S. A. Tabei, S. Banerjee, and M. P. Murrell, Nature communications 9, 1 (2018).
- J. Li, J. M. Horowitz, T. R. Gingrich, and N. Fakhri, Nature communications 10, 1 (2019).
- S. Kullback and R. A. Leibler, The annals of mathemat- ical statistics 22, 79 (1951).
- É. Roldán and J. M. Parrondo, Physical Review E 85, 031129 (2012).
- L. Dabelow, S. Bo, and R. Eichhorn, Physical Review X 9, 021009 (2019).
- J. M. Parrondo, J. M. Horowitz, and T. Sagawa, Nature physics 11, 131 (2015).
- J. M. Horowitz and M. Esposito, Physical Review X 4, 031015 (2014).
- S. Martiniani, P. M. Chaikin, and D. Levine, Physical Review X 9, 011031 (2019).
- C. Nardini, É. Fodor, E. Tjhung, F. Van Wijland, J. Tailleur, and M. E. Cates, Physical Review X 7, 021007 (2017).
- C. Maes, Physics Reports (2020).
- S. Shankar and M. C. Marchetti, Physical Review E 98, 020604 (2018).
- A. C. Barato and U. Seifert, Physical review letters 114, 158101 (2015).
- J. M. Horowitz and T. R. Gingrich, Nature Physics , 1 (2019).
- J. M. Horowitz and T. R. Gingrich, Physical Review E 96, 020103 (2017).
- T. Harada and S.-i. Sasa, Physical review letters 95, 130602 (2005).
- S. Shinkai and Y. Togashi, EPL (Europhysics Letters) 105, 30002 (2014).
- J. Palacci, S. Sacanna, S.-H. Kim, G.-R. Yi, D. Pine, and P. Chaikin, Philosophical Transactions of the Royal Soci- ety A: Mathematical, Physical and Engineering Sciences 372, 20130372 (2014).
- P. Romanczuk, M. Bär, W. Ebeling, B. Lindner, and L. Schimansky-Geier, The European Physical Journal Special Topics 202, 1 (2012).
- W. W. Ahmed, É. Fodor, and T. Betz, Biochimica et Biophysica Acta (BBA)-Molecular Cell Research 1853, 3083 (2015).
- S. Toyabe, H.-R. Jiang, T. Nakamura, Y. Murayama, and M. Sano, Physical Review E 75, 011122 (2007).
- É. Fodor, W. W. Ahmed, M. Almonacid, M. Bussonnier, N. S. Gov, M.-H. Verlhac, T. Betz, P. Visco, and F. van Wijland, EPL (Europhysics Letters) 116, 30008 (2016).
- J. Schindelin, I. Arganda-Carreras, E. Frise, V. Kaynig, M. Longair, T. Pietzsch, S. Preibisch, C. Rueden, S. Saalfeld, B. Schmid, et al., Nature methods 9, 676 (2012).
- S. S. Rogers, T. A. Waigh, X. Zhao, and J. R. Lu, Phys- ical Biology 4, 220 (2007).
- G. Volpe, S. Gigan, and G. Volpe, American Journal of Physics 82, 659 (2014).
- W. W. Ahmed and T. A. Saif, Scientific reports 4, 4481 (2014).
- F. Höfling and T. Franosch, Reports on Progress in Physics 76, 046602 (2013).
- K. Sekimoto, Progress of Theoretical Physics Supplement 130, 17 (1998).
- W. Coffey and Y. P. Kalmykov, The Langevin equation: with applications to stochastic problems in physics, chem- istry and electrical engineering, Vol. 27 (World Scientific, 2012).
- R. Kubo, Reports on progress in physics 29, 255 (1966).
- É. Fodor and M. C. Marchetti, Physica A: Statistical Mechanics and its Applications 504, 106 (2018).
- A. Shee, A. Dhar, and D. Chaudhuri, arXiv preprint arXiv:2002.01815 (2020).
- A. Colin, G. Letort, N. Razin, M. Almonacid, W. Ahmed, T. Betz, M.-E. Terret, N. S. Gov, R. Voituriez, Z. Guer- oui, et al., The Journal of Cell Biology 219 (2020).
- T. Toyota, D. A. Head, C. F. Schmidt, and D. Mizuno, Soft Matter 7, 3234 (2011).
- B. Stuhrmann, M. S. e Silva, M. Depken, F. C. MacK- intosh, and G. H. Koenderink, Physical Review E 86, 020901 (2012).
- F. Gallet, D. Arcizet, P. Bohec, and A. Richert, Soft Matter 5, 2947 (2009).
- M. Guo, A. J. Ehrlicher, M. H. Jensen, M. Renz, J. R. Moore, R. D. Goldman, J. Lippincott-Schwartz, F. C. Mackintosh, and D. A. Weitz, Cell 158, 822 (2014).
- W. W. Ahmed, E. Fodor, M. Almonacid, M. Bussonnier, M.-H. Verlhac, N. Gov, P. Visco, F. Van Wijland, and T. Betz, Biophysical journal 114, 1667 (2018).
- P. Bohec, J. Tailleur, F. van Wijland, A. Richert, and F. Gallet, arXiv preprint arXiv:1903.00349 (2019).
- J. Happel and H. Brenner, Low Reynolds number hydro- dynamics: with special applications to particulate media, Vol. 1 (Springer Science & Business Media, 2012).
- K. Sekimoto, Stochastic energetics, Vol. 799 (Springer, 2010).
- J. Arlt, V. A. Martinez, A. Dawson, T. Pilizota, and W. C. Poon, Nature communications 9, 1 (2018).
- J. Elgeti, R. G. Winkler, and G. Gompper, Reports on progress in physics 78, 056601 (2015).
- L. F. Cugliandolo, Journal of Physics A: Mathematical and Theoretical 44, 483001 (2011).
- T. Betz, M. Lenz, J.-F. Joanny, and C. Sykes, Proceed- ings of the National Academy of Sciences 106, 15320 (2009).
- E. Ben-Isaac, Y. Park, G. Popescu, F. L. Brown, N. S. Gov, and Y. Shokef, Physical review letters 106, 238103 (2011).
- H. Turlier, D. A. Fedosov, B. Audoly, T. Auth, N. S. Gov, C. Sykes, J.-F. Joanny, G. Gompper, and T. Betz, Nature Physics 12, 513 (2016).
- C. Wilhelm, Physical review letters 101, 028101 (2008).
- N. Greinert, T. Wood, and P. Bartlett, Physical review letters 97, 265702 (2006).
- S. Jabbari-Farouji, D. Mizuno, M. Atakhorrami, F. C. MacKintosh, C. F. Schmidt, E. Eiser, G. H. Wegdam, and D. Bonn, Physical review letters 98, 108302 (2007).
- L. Bellon, S. Ciliberto, and C. Laroche, EPL (Euro- physics Letters) 53, 511 (2001).
- D. Krapf, E. Marinari, R. Metzler, G. Oshanin, X. Xu, and A. Squarcini, New Journal of Physics 20, 023029 (2018).
- D. Krapf, N. Lukat, E. Marinari, R. Metzler, G. Oshanin, C. Selhuber-Unkel, A. Squarcini, L. Stadler, M. Weiss, and X. Xu, Physical Review X 9, 011019 (2019).
- C. Bustamante, J. Liphardt, and F. Ritort, Physics To- day 58, 43 (2005).
- B. Lander, J. Mehl, V. Blickle, C. Bechinger, and U. Seifert, Physical Review E 86, 030401 (2012).