Fishes of the genus Cottus have long been taxonomically challenging because of morphological simi... more Fishes of the genus Cottus have long been taxonomically challenging because of morphological similarities among species and their tendency to hybridize, and a number of undescribed species may remain in this genus. We used a combination of genetic and morphological methods to delineate and describe Cottus schitsuumsh, Cedar Sculpin, a new species, from the upper Columbia River basin, Idaho-Montana, USA. Although historically confused with the Shorthead Sculpin (C. confusus), the genetic distance between C. schitsuumsh and C. confusus (4.84-6.29%) suggests these species are distant relatives. Moreover, the two species can be differentiated on the basis of lateral-line pores on the caudal peduncle, head width, and interpelvic width. Cottus schitsuumsh is also distinct from all other Cottus in this region in having a single small, skin-covered, preopercular spine. Haplotypes of mtDNA cytochrome oxidase c subunit 1 of C. schitsuumsh differed from all other members of the genus at three positions, had interspecific genetic distances typical for congeneric fishes (1.61-2.74% to nearest neighbors), and were monophyletic in maximum-likelihood trees. Microsatellite analyses confirmed these taxonomic groupings for species potentially sympatric with C. schitsuumsh and that fish used in morphological comparisons were unlikely to be introgressed. Its irregular distribution, in the Spokane River basin in Idaho and portions of the Clark Fork River basin in Montana, may have resulted from human-assisted translocation.
Ecological Assessment and Evaluation of Potential Eradication Approaches for Introduced Redside Shiners in a Montane Lake
North American Journal of Fisheries Management, Aug 19, 2021
Introduced species can alter the dynamics of food webs, species interactions, populations, and co... more Introduced species can alter the dynamics of food webs, species interactions, populations, and communities and can reduce a system’s recreational value. Several reports have documented the establishment of Redside Shiners Richardsonius balteatus in mountain lakes, resulting in declines in sizes and abundance of salmonid species. An illegal bait bucket release introduced Redside Shiners into Green Canyon Lake, Montana, USA, in the 1980s. Recently, local anglers began complaining of decreases in size and catch rates of Westslope Cutthroat Trout (WCT) Oncorhynchus clarkii lewisi. Our first objective was to understand the diet overlap between Redside Shiners and WCT in Green Canyon Lake. Based on δ15N and δ13C isotopic signatures and diet contents, we found little evidence that WCT were substantially preying upon Redside Shiners. We found moderate diet overlap between WCT and Redside Shiners, with both species predominately feeding on Diptera. For our second objective, we developed a population model to assess potential options for eradicating Redside Shiners. We observed Redside Shiners up to 7 years of age and with a maximum TL of 159 mm, high annual survival (50%), and mature females at age 2. We used an age‐structured model to evaluate two hypothetical suppression actions: piscicide application and stocking of Rainbow Trout O. mykiss. Four consecutive piscicide treatments had a 20% probability of eradicating Redside Shiners, increasing to a 100% eradication probability after seven treatments. Bioenergetic simulations indicated that an individual Rainbow Trout (500 g) would consume 1,759 g of Redside Shiners annually. Incorporating this predation mortality and a compensatory response (50% increase in age‐1 survival), we estimated that maintained abundances of up to 700 Rainbow Trout would not cause a decline in the Redside Shiner population. Our results suggest that eradication of an introduced prey fish like the Redside Shiner would be difficult and that effective removal will require dedicated effort and resources by managers.
Environmental DNA (eDNA) sampling in aquatic environments is a unique tool in that the taxonomic ... more Environmental DNA (eDNA) sampling in aquatic environments is a unique tool in that the taxonomic coverage represented by a single sample is large, with virtually all members of the local biota potentially represented (Hauck, Weitemeir, Penaluna, Garcia, & Cronn, 2019). The obvious potential of eDNA sampling to revolutionize monitoring, bioassessment, and ecological research has been pointed out repeatedly in recent years (Cristescu & Hebert, 2018; Deiner et al., 2017). However, accessing taxonomically broad biodiversity information from environmental samples is nontrivial. The available eDNA analysis methods present an apparent tradeoff between taxonomic scope and reliability of detection. One end of the spectrum is represented by single-taxon methods (e.g., taxon-specific quantitative or digital PCR). Properly designed taxon-specific assays are free from cross-amplification with other taxa and can reliably detect target DNA at low concentrations (e.g., <10 copies per reaction; Klymus et al., 2019). These approaches necessarily have a narrow taxonomic scope, but also tend to be more sensitive for rare species detection than multi-taxa approaches (Harper et al., 2018;
This is an open access article under the terms of the Creative Commons Attribution License, which... more This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
Estimating inundation of small waterbodies with sub‐pixel analysis of Landsat imagery: long‐term trends in surface water area and evaluation of common drought indices
Remote Sensing in Ecology and Conservation, Jul 10, 2020
Small waterbodies are numerically dominant in many landscapes and provide several important ecosy... more Small waterbodies are numerically dominant in many landscapes and provide several important ecosystem services, but automated measurement of waterbodies smaller than a standard Landsat pixel (0.09 ha) remains challenging. To further evaluate sub‐Landsat pixel techniques for estimating inundation extent of small waterbodies (basin area: 0.06–1.79 ha), we used a partial spectral unmixing method with matched filtering applied to September 1985–2018 Landsat 5 and eight imagery from southern Arizona, USA. We estimated trends in modeled surface water area each September and evaluated the ability of several common drought indices to explain variation in mean water area. Our methods accurately classified waterbodies as dry or inundated (Landsat 5: 91.3%; Landsat 8: 98.9%) and modeled and digitized surface water areas were strongly correlated (R2 = 0.70–0.92; bias = −0.024 to −0.015 ha). Estimated surface water area was best explained by the 3‐month seasonal standardized precipitation index (SPI03; July‒September). We found a wide range of estimated relationships between drought indices (e.g. SPI vs. Palmer Drought Severity Index) and estimated water area, even for different durations of the same drought index (e.g. SPI01 vs. SPI12). Mean waterbody surface area decreased by ~14% from September 1985 to September 2018, which matches declines in local annual precipitation and regional trends of reduced inundation extent of larger waterbodies. These results emphasize the importance of understanding local systems when relying on drought indices to infer variation in past or future surface water dynamics. Several challenges remain before widespread application of sub‐pixel methods is feasible, but our results provide further evidence that partial spectral unmixing with matched filtering provides reliable measures of inundation extent of small waterbodies.
Influence of water temperature and biotic interactions on the distribution of westslope cutthroat trout (<i>Oncorhynchus clarkii lewisi</i>) in a population stronghold under climate change
Canadian Journal of Fisheries and Aquatic Sciences, Apr 1, 2021
Climate warming is expected to have substantial impacts on native trout across the Rocky Mountain... more Climate warming is expected to have substantial impacts on native trout across the Rocky Mountains, but there is little understanding of how these changes affect future distributions of co-occurring native fishes within population strongholds. We used mixed-effects logistic regression to investigate the role of abiotic (e.g., temperature) and biotic factors (bull trout presence, Salvelinus confluentus) on distributions of westslope cutthroat trout (Oncorhynchus clarkii lewisi; WCT) in the North Fork Flathead River, USA and Canada. The probability of WCT presence increased with stream temperature and decreased with channel gradient and bull trout presence, yet the effect of bull trout was reduced with increasing pool densities. Combining this model with spatially explicit stream temperature projections, we predict a 29% increase in suitable habitat under high emissions through 2075, with gains at mid-elevation sites predicted to exceed bull trout thermal tolerances and high-elevation sites expected to become more thermally suitable for WCT. Our study illustrates the importance of considering abiotic and biotic drivers to assess species response to climate change, helping to guide local-scale climate adaptation and management.
Comparative studies of mortality in the wild are necessary to understand the evolution of aging; ... more Comparative studies of mortality in the wild are necessary to understand the evolution of aging; yet, ectothermic tetrapods are underrepresented in this comparative landscape, despite their suitability for testing evolutionary hypotheses. We present a study of aging rates and longevity across wild tetrapod ectotherms, using data from 107 populations (77 species) of nonavian reptiles and amphibians. We test hypotheses of how thermoregulatory mode, environmental temperature, protective phenotypes, and pace of life history contribute to demographic aging. Controlling for phylogeny and body size, ectotherms display a higher diversity of aging rates compared with endotherms and include phylogenetically widespread evidence of negligible aging. Protective phenotypes and life-history strategies further explain macroevolutionary patterns of aging. Analyzing ectothermic tetrapods in a comparative context enhances our understanding of the evolution of aging.
Human activities that fragment fish habitat have isolated inland salmonid populations. This isola... more Human activities that fragment fish habitat have isolated inland salmonid populations. This isolation is associated with loss of migratory life histories and declines in population density and abundance. Isolated populations exhibiting only resident life histories may be more likely to persist if individuals can increase lifetime reproductive success by maturing at smaller sizes or earlier ages. Therefore, accurate estimates of age and size at maturity across resident salmonid populations would improve estimates of population viability. Commonly used methods for assessing maturity such as dissection, endoscopy and hormone analysis are invasive and may disturb vulnerable populations. Ultrasound imaging is a non-invasive method that has been used to measure reproductive status across fish taxa. However, little research has assessed the accuracy of ultrasound for determining maturation status of small-bodied fish, or reproductive potential early in a species’ reproductive cycle. To add...
Thermal conditions predict intraspecific variation in senescence rate in frogs and toads
Proceedings of the National Academy of Sciences, 2021
Significance Using long-term demographic studies, we showed that warmer temperatures are associat... more Significance Using long-term demographic studies, we showed that warmer temperatures are associated with increased senescence rates and decreased lifespans in four amphibian species that are widely distributed across two continents (North America and Europe). Our study highlights the role of changing climatic conditions in the aging of ectotherms in the context of global warming.
Temperature is a critical driver of ectotherm life‐history strategies, whereby a warmer environme... more Temperature is a critical driver of ectotherm life‐history strategies, whereby a warmer environment is associated with increased growth, reduced longevity and accelerated senescence. Increasing evidence indicates that thermal adaptation may underlie such life‐history shifts in wild populations. Single nucleotide polymorphisms (SNPs) and copy number variants (CNVs) can help uncover the molecular mechanisms of temperature‐driven variation in growth, longevity and senescence. However, our understanding of these mechanisms is still limited, which reduces our ability to predict the response of non‐model ectotherms to global temperature change. In this study, we examined the potential role of thermal adaptation in clinal shifts of life‐history traits (i.e. life span, senescence rate and recruitment) in the Columbia spotted frog Rana luteiventris along a broad temperature gradient in the western United States. We took advantage of extensive capture–recapture datasets of 20,033 marked indiv...
A broader understanding of how landscape resistance influences climate change vulnerability for m... more A broader understanding of how landscape resistance influences climate change vulnerability for many species is needed, as is an understanding of how barriers to dispersal may impact vulnerability. Freshwater biodiversity is at particular risk, but previous studies have focused on popular cold‐water fishes (e.g., salmon, trout, and char) with relatively large body sizes and mobility. Those fishes may be able to track habitat change more adeptly than less mobile species. Smaller, less mobile fishes are rarely represented in studies demonstrating effects of climate change, but depending on their thermal tolerance, they may be particularly vulnerable to environmental change. By revisiting 280 sites over a 20 year interval throughout a warming riverscape, we described changes in occupancy (i.e., site extirpation and colonization probabilities) and assessed the environmental conditions associated with those changes for four fishes spanning a range of body sizes, thermal and habitat prefe...
Habitat loss and fragmentation have caused population decline across taxa through impacts on life... more Habitat loss and fragmentation have caused population decline across taxa through impacts on life history diversity, dispersal patterns, and gene flow. Yet, intentional isolation of native fish populations is a frequently used management strategy to protect against negative interactions with invasive fish species. We evaluated the population viability and genetic diversity of 12 isolated populations of Oncorhynchus clarkii lewisi located on the Flathead Indian Reservation in Montana, USA. Length-structured integral projection models (IPMs) were used to project population growth rate (lambda) and its sensitivity to underlying vital rates and parameters. We examined relationships between lambda, genetic diversity, and habitat size and quality. Lambda ranged from 0.68 to 1.1 with 10 of 12 populations projected to be in decline. A sensitivity analysis of lambda with respect to projection matrix elements indicated that lambda was generally sensitive to changes in early life history stages (survival/growth), but patterns differed among populations. Another sensitivity analysis with respect to underlying model parameters showed highly consistent pattern across populations, with lambda being most sensitive to the slope of probability of maturity (estimated from published literature), generally followed by adult survival, and the slope of somatic growth rate (directly measured from each population). Lambda was not correlated with genetic diversity. For populations residing in small isolated streams (≤5 km of occupied habitat), lambda significantly increased with base flow discharge (r 2 = 0.50, p < 0.02). Our results highlight the potential importance of local adaptation for persistence of small, isolated populations. Specifically we saw evidence for higher probability of maturity at smaller sizes in the smallest, coldest isolated systems, increasing probability of persistence for these populations. Climate change threatens to
Fragmentation and isolation of wildlife populations has reduced genetic diversity worldwide, leav... more Fragmentation and isolation of wildlife populations has reduced genetic diversity worldwide, leaving many populations vulnerable to inbreeding depression and local extinction. Nonetheless, isolation is protecting many native aquatic species from interactions with invasive species, often making reconnection an unrealistic conservation strategy. Isolation management is widely used to protect extant cutthroat trout (Oncorhynchus clarkii) populations from invasive species. Despite this, few studies have empirically examined how predictor variables including habitat length, population size, time since isolation and habitat quality, relate to levels of genetic diversity in isolated trout populations. We compared allelic richness of cutthroat trout across 14 microsatellite loci in two connected and 12 anthropogenically isolated populations of the Flathead River basin, Montana. Isolated populations in habitat fragments \8 km stream length had reduced genetic diversity, but diversity was not significantly related to any of our predictor variables. To broaden our scope, we analyzed seven geologically isolated populations from the same river basin occupying habitat fragments up to 18 km in length. These populations showed reduced diversity, regardless of fragment size. Furthermore, geologically isolated populations had significantly lower average allelic richness compared to streams recently isolated by anthropogenic activities. These results demonstrate a consistent loss of genetic diversity through time in isolated populations, emphasizing the need to explore strategies to minimize risks of inbreeding depression. Testing conservation theory and subsequent assumptions broadly across taxa is necessary to ensure efficacy of conservation efforts.
Neuse River Estuary Fish Monitoring Project Phase II: Effects of Hypoxia on the Use and Quality of Fish Habitat
... We gratefully acknowledge Hazel Richmond, Paula Gillikin, Shae Keller, Kristin TePas, Daniell... more ... We gratefully acknowledge Hazel Richmond, Paula Gillikin, Shae Keller, Kristin TePas, Danielle Waples, Damon Gannon, Kevin Craig, Andrew Westgate, Heather Koopman, Mike Mascia, Kris Parker, Carrie Selberg, Mike McClellan, Katie Barnas, Rebecca Goldman, Julia ...
Juvenile salmonid growth, survival, and production in a large river floodplain modified by beavers (Castor canadensis)
Canadian Journal of Fisheries and Aquatic Sciences, 2015
Beavers (Castor canadensis) may strongly influence juvenile salmon production by damming spring b... more Beavers (Castor canadensis) may strongly influence juvenile salmon production by damming spring brooks that are primary rearing habitats on expansive floodplains of large Pacific Rim salmon rivers. We studied three floodplain rearing habitats in the Kwethluk River, Alaska: free-flowing (beaver-free, n = 3) and beaver-influenced (below beaver dams, n = 4) spring brooks and early-successional beaver ponds (n = 4). We analyzed juvenile coho (Oncorhynchus kisutch) and Chinook (Oncorhynchus tshawytschwa) salmon movement, survival, densities, and growth using a multistate robust capture–mark–recapture design. Survival (46% to 80%) and densities (0.9 fish·m−2) were highest in beaver-free spring brooks. Ponds had lower salmon densities, producing less biomass per unit area than beaver-influenced or beaver-free spring brooks (1.87 ± 0.57 g·m−2vs. 2.98 ± 1.22 and 3.23 ± 0.73 g·m−2). However, ponds covered 2× greater area than either type of spring brook and therefore produced more salmon biom...
Figure 7 In Cottus Schitsuumsh, A New Species Of Sculpin (Scorpaeniformes: Cottidae) In The Columbia River Basin, Idaho-Montana, Usa
FIGURE 7. Lateral pores absent on the caudal peduncle on Cottus schitsuumsh (left) and present on... more FIGURE 7. Lateral pores absent on the caudal peduncle on Cottus schitsuumsh (left) and present on Cottus confusus (right).
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